PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00053g00181.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family LBD
Protein Properties Length: 189aa    MW: 20802.8 Da    PI: 6.491
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00053g00181.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260142.51.3e-4461051100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk+FGasn++k+l++lp ++r da++slvyeA+ar+rdPvyG+vg i+ lq+
  Peaxi162Scf00053g00181.1   6 PCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNISKMLQELPMQQRADAVNSLVYEANARMRDPVYGCVGAISYLQN 90 
                               7************************************************************************************ PP

                    DUF260  86 qleqlkaelallkee 100
                               q++ql+ +la++++e
  Peaxi162Scf00053g00181.1  91 QVSQLEMQLAVAQSE 105
                               ***********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.2295106IPR004883Lateral organ boundaries, LOB
PfamPF031957.4E-446103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGGTSPCASC KLLRRRCAKD CIFAPYFPPD DPHKFAIVHK VFGASNISKM LQELPMQQRA  60
DAVNSLVYEA NARMRDPVYG CVGAISYLQN QVSQLEMQLA VAQSEILCIQ MQQEPAPSSL  120
LPVITQMGHD EKSLLLNNIN AASDFNNLQQ YLSFAANSSS SVMQDPLKRE SLSSPASSLA  180
DLEFRHCGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-4921257130LOB family transfactor Ramosa2.1
5ly0_B9e-4921257130LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027150317.18e-94LOB domain-containing protein 12
SwissprotQ8LBW35e-77LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A068ULU33e-92A0A068ULU3_COFCA; Uncharacterized protein
STRINGVIT_06s0004g07200.t012e-92(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.11e-78LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]