PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00054g00211.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 195aa    MW: 21207.6 Da    PI: 4.8064
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00054g00211.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.2e-163987255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                               ++G+r+++  g+Wv+eIr+p++   ++r++lg+f t+e+Aa+a++ a+++l+g
  Peaxi162Scf00054g00211.1 39 NFRGIRQRS--GKWVSEIREPRK---TTRIWLGTFPTPEMAAAAYDVAALALKG 87
                              58***9865..*********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.04E-183897No hitNo description
PfamPF008472.4E-103887IPR001471AP2/ERF domain
SMARTSM003801.0E-3139101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-273996IPR001471AP2/ERF domain
PROSITE profilePS5103220.2713995IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-184096IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MSQYPYNVTP SYDNNPPPSE NISPTGSSSV LSPRGRHPNF RGIRQRSGKW VSEIREPRKT  60
TRIWLGTFPT PEMAAAAYDV AALALKGPDA PLNFPELVNS YPLPHSLSGV DIRTAAATAA  120
AFKAPHAQQS TEVLPDTTVG GQGQGYMDEE EIFGMPKLLD DMAEGMLVSP PRMHQSTSYD  180
VSPENSDGDS LWSYP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1534100268ATERF1
3gcc_A6e-1534100268ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018634437.15e-81PREDICTED: ethylene-responsive transcription factor ERF025-like
SwissprotQ9FJ902e-50ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A1S4A6R22e-79A0A1S4A6R2_TOBAC; ethylene-responsive transcription factor ERF025-like
STRINGXP_009629720.12e-80(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.18e-49ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]