PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00054g02213.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NAC
Protein Properties Length: 375aa    MW: 43210.7 Da    PI: 6.5088
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00054g02213.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.22.8e-5271361129
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgy 82 
                               +ppGfrFhPtdeelv++yL+kk++++++e+ +vik++d+yk+ePwdL++  ++   e ++wyfFs++dkky+tg+r+nrat++g+
  Peaxi162Scf00054g02213.1   7 VPPGFRFHPTDEELVDYYLRKKITSRRIEV-DVIKDIDLYKIEPWDLQElcRIGPeEVSDWYFFSHKDKKYPTGTRTNRATAAGF 90 
                               69****************************.9***************9534333225569************************* PP

                       NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                               Wkatg+dk+++s k+ l+g++ktLv+ykgrap+g+k+d +mheyrle
  Peaxi162Scf00054g02213.1  91 WKATGRDKAIYS-KHDLIGMRKTLVYYKGRAPNGQKSDFIMHEYRLE 136
                               ************.8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-565169IPR003441NAC domain
PROSITE profilePS5100555.4447169IPR003441NAC domain
PfamPF023654.2E-278135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MNAFSHVPPG FRFHPTDEEL VDYYLRKKIT SRRIEVDVIK DIDLYKIEPW DLQELCRIGP  60
EEVSDWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHDLIGMR KTLVYYKGRA  120
PNGQKSDFIM HEYRLETDPN GAPQANGLIS ILIYADSEEG WVICRVFKKK IAAMRMDSDH  180
GSPIWYDDHQ VSFMHDMDSP KPHPQSTLTS YHYPNYPNCK KELNLQYNQF PPHHHQQFIQ  240
IPPIETSKFL ATPQGTSCTS MPVFGINVNQ SSMPTQEHMH PMFGNNDKGS ANDQVEDQVT  300
DWRVLDKFVA SQLSQEDENN FSNAANTLHD SNLMVTNSNK EEMAPENTST ASSSSIDKNV  360
MRIILNMIWL ILIYC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-47617014169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754452e-90HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009602844.10.0PREDICTED: NAC domain-containing protein 7-like
RefseqXP_016456031.10.0PREDICTED: NAC domain-containing protein 7-like
SwissprotQ9FWX21e-127NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A1S3YUR90.0A0A1S3YUR9_TOBAC; NAC domain-containing protein 7-like
STRINGXP_009602844.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-114NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]