PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00057g00055.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

FAR1

Protein Properties

Length: 229aa MW: 26533 Da PI: 9.0595

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00057g00055.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.7	3.1e-07	78	118	49	90
FAR1 49 ekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 e++ r+r e +gC a++k k + +g+wev +++ H+H++ Peaxi162Scf00057g00055.1 78 EERTRKRLEYGCGCMARIKFKIS-NGTWEVCEFDDVHSHPMI 118 45667777778888888888877.***************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-4	78	118	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MEDLNIEKDL ADQEDHTVKD QDFSIRVHNV YNINKDFVFE IDMKFGSEEE SYNAYNTYVV 60 TKGFGVRKGQ CAKFSPYEER TRKRLEYGCG CMARIKFKIS NGTWEVCEFD DVHSHPMIEE 120 NLRHFILSGR KLTTANDVDS EEVARKYLYQ AKVDITKLQS KLYAQDCDKN MHKFGSTVDP 180 QGSKDLILDP IKKKRKGNGY GRLKPNIEKR RKSASQKASK DKIGLSHKQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	193	211	KRKGNGYGRLKPNIEKRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975519	5e-47	HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019266793.1	3e-49	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A2G2WJP3	1e-52	A0A2G2WJP3_CAPBA; Uncharacterized protein
TrEMBL	A0A2G3C727	1e-52	A0A2G3C727_CAPCH; Uncharacterized protein
STRING	XP_009628526.1	1e-46	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1726	9	31