PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00059g00716.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HD-ZIP
Protein Properties Length: 289aa    MW: 32670.3 Da    PI: 6.35
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00059g00716.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.63.8e-1795148356
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa+ k
  Peaxi162Scf00059g00716.1  95 KKRRLNLEQVKALERSFELGNKLEPERKIQLARALGLQPRQIAIWFQNRRARCK 148
                               4557899*********************************************99 PP
2HD-ZIP_I/II127.46.2e-4194185192
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               ekkrrl+ eqvk+LE+sFe  +kLeperK +lar+Lglqprq+a+WFqnrRAR ktkqlEkdy+ Lkr++d+lk++n++L+++++
  Peaxi162Scf00059g00716.1  94 EKKRRLNLEQVKALERSFELGNKLEPERKIQLARALGLQPRQIAIWFQNRRARCKTKQLEKDYDILKRQFDKLKADNDALKSQNK 178
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLreelk 92 
                               +L++el+
  Peaxi162Scf00059g00716.1 179 KLHSELQ 185
                               ****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.58E-1888152IPR009057Homeodomain-like
SMARTSM003893.4E-1893154IPR001356Homeobox domain
PROSITE profilePS5007116.08294150IPR001356Homeobox domain
CDDcd000861.77E-1695151No hitNo description
PfamPF000462.4E-1495148IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.8E-1897157IPR009057Homeodomain-like
PRINTSPR000311.7E-5121130IPR000047Helix-turn-helix motif
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PRINTSPR000311.7E-5130146IPR000047Helix-turn-helix motif
CDDcd146860.00161141185No hitNo description
PfamPF021835.6E-15150188IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MLSRGTGTMA FLPAGPESSV DFRSHEDNGL TSTFPSVFPS SCAPPHQDFH GISSVLMRRA  60
MSFSGVERCD DHHQDSRADH DEMSDDGSSH LLGEKKRRLN LEQVKALERS FELGNKLEPE  120
RKIQLARALG LQPRQIAIWF QNRRARCKTK QLEKDYDILK RQFDKLKADN DALKSQNKKL  180
HSELQLLTLG NKESAADGTP ILFNLNKENE GSNWNNNGSV DDNSTVIDVN LGTTTRTSST  240
NSPLNNHDVF PTTYKIDQTT VPEEGFCNMF TTVEDQTNFW PLPVQQHFY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142150RRARCKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754412e-84HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016490250.11e-148PREDICTED: homeobox-leucine zipper protein HAT7-like isoform X1
RefseqXP_019258561.11e-148PREDICTED: homeobox-leucine zipper protein HAT7-like isoform X1
SwissprotQ004662e-72HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLA0A1S4BN141e-146A0A1S4BN14_TOBAC; homeobox-leucine zipper protein HAT7-like isoform X1
TrEMBLA0A314LFK71e-147A0A314LFK7_NICAT; Homeobox-leucine zipper protein hat7
STRINGXP_009775432.11e-147(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.13e-70homeobox 3