PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00061g00181.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 182aa    MW: 21233.1 Da    PI: 10.2791
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00061g00181.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.91.5e-141355547
                              SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                    SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                              n++ r + +  R ++++KKAeE S+LC++e+av++fs + + y
  Peaxi162Scf00061g00181.1 13 NERSRMIVLQERSATLFKKAEEFSILCGVEIAVVVFSVEENQY 55
                              88999999*****************************887666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554557.06E-18184IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.311161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-13160IPR002100Transcription factor, MADS-box
CDDcd002661.46E-16266No hitNo description
PRINTSPR004041.5E-9323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-141352IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MARKKLKIAR LVNERSRMIV LQERSATLFK KAEEFSILCG VEIAVVVFSV EENQYESVWP  60
SKEKFKQILM KYLDKPLTER LKKLTTHEKY LRKEVDAGMN NLKIIAKKTE EKEMEQLFNQ  120
LYAGEKTILE LDKRQLIGVH NLAIKMKEKV VERRKQLNVQ DQRAQLPVDD PLALRLAPPG  180
SL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616634.12e-77PREDICTED: agamous-like MADS-box protein AGL80
RefseqXP_016502248.12e-77PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A1S4CLZ85e-76A0A1S4CLZ8_TOBAC; agamous-like MADS-box protein AGL80
STRINGXP_009616634.18e-77(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.25e-17M-type_MADS family protein