PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00062g01423.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family LBD
Protein Properties Length: 171aa    MW: 18808.3 Da    PI: 7.7939
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00062g01423.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260141.33.2e-44121111100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               +CaaCk+lrr+C++dCv+ pyfp ++p+kfa vhk+FGasnv k+l++lpe +r+da+ss+vyeA+ar+rdPvyG+vg+i++lqq
  Peaxi162Scf00062g01423.1  12 PCAACKLLRRRCTQDCVFTPYFPGDEPQKFASVHKVFGASNVNKMLQELPEYQRSDAVSSMVYEANARMRDPVYGCVGTISSLQQ 96 
                               7************************************************************************************ PP

                    DUF260  86 qleqlkaelallkee 100
                               q++ l+++la  ++e
  Peaxi162Scf00062g01423.1  97 QVDLLQTQLAISQAE 111
                               **********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.61511112IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-4412109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MESGRKQGTA SPCAACKLLR RRCTQDCVFT PYFPGDEPQK FASVHKVFGA SNVNKMLQEL  60
PEYQRSDAVS SMVYEANARM RDPVYGCVGT ISSLQQQVDL LQTQLAISQA ELVHMKMQQF  120
SSMSGGGSTT NSPENASPSS RHTQSPMTRS LFTMDVQVVD QANIGMPLWS C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-4981337127LOB family transfactor Ramosa2.1
5ly0_B5e-4981337127LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754513e-57HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004250781.11e-103LOB domain-containing protein 4
SwissprotQ9SHE93e-70LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A3Q7IXK01e-101A0A3Q7IXK0_SOLLC; Uncharacterized protein
STRINGSolyc11g045530.1.11e-102(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.11e-63LOB domain-containing protein 4