PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00065g00036.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

C2H2

Protein Properties

Length: 183aa MW: 20257.2 Da PI: 10.9783

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00065g00036.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	8.8e-05	50	72	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H Peaxi162Scf00065g00036.1 50 FECQYCHREFANSQALGGHQNAH 72 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.63E-6	46	77	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.3E-4	47	76	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	8.4E-6	49	74	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.739	50	77	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	52	72	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MGESSVHSTS SLSSSPPRQV MKLFGFPVTD CDKTTALPPP PLHDVDSKRF ECQYCHREFA 60 NSQALGGHQN AHKKERQKTK RAHLITGASG DHQQRFRPVA PMINAHAVRS SGPLIGLTNA 120 AMSRYGARFR SQVLSGVPLR FQILRPQQIM AVQSTPDGTI NNGMEVDLHL RLAPPQRQIM 180 KMP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015080072.1	4e-61	zinc finger protein 6-like
TrEMBL	A0A2G2XR52	1e-63	A0A2G2XR52_CAPBA; Zinc finger protein 8
STRING	Solyc01g060420.2.1	2e-59	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10563	17	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06650.1	6e-15	C2H2 family protein