PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00066g00133.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MIKC_MADS
Protein Properties Length: 275aa    MW: 31865 Da    PI: 7.5236
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00066g00133.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.43.9e-28959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krienk+ rqvtfskRr+g+lKK +ELSvLCda++ +iifss+gkl+ey+s
  Peaxi162Scf00066g00133.1  9 KRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCS 59
                              79***********************************************96 PP
2K-box60.47.3e-21821671196
                     K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                               e +  +l+ e+ak+++ + nLq ++ +++G+dL+  +++eL++Le+qLe++l+kiR++K el+ +q+e+l+k ek+l++en+++ 
  Peaxi162Scf00066g00133.1  82 EDNRVQLYDEVAKMRRDTLNLQLSLQRYKGDDLSLAQYEELNELEKQLEHALNKIRARKLELMQQQMENLKKTEKMLEKENHDMY 166
                               45566799*************************************************************************9887 PP

                     K-box  96 k 96 
                               +
  Peaxi162Scf00066g00133.1 167 Q 167
                               6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.8E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.497161IPR002100Transcription factor, MADS-box
CDDcd002656.48E-45279No hitNo description
SuperFamilySSF554552.09E-31279IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.7E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.03285175IPR002487Transcription factor, K-box
PfamPF014865.2E-1985168IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGRGKIEVKR IENKTSRQVT FSKRRAGLLK KTHELSVLCD AQIGLIIFSS KGKLFEYCSQ  60
PHSMSQIISR YLQTTGASLP VEDNRVQLYD EVAKMRRDTL NLQLSLQRYK GDDLSLAQYE  120
ELNELEKQLE HALNKIRARK LELMQQQMEN LKKTEKMLEK ENHDMYQWLM NNQMYKQESA  180
AMDHEDHHHH HEHQQAITEL NLLGEQPLLS HFTFFGDQEQ PSTSTVNHFA SISLTSPPAN  240
SISPYRLQPS HPNLQDSHTD HALTTRSSKC WVSGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-19171169MEF2C
5f28_B3e-19171169MEF2C
5f28_C3e-19171169MEF2C
5f28_D3e-19171169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3352420.0AF335242.1 Petunia x hybrida MADS-box transcription factor FBP24 (FBP24) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019262752.11e-144PREDICTED: MADS-box protein FBP24
RefseqXP_019262753.11e-144PREDICTED: MADS-box protein FBP24
SwissprotQ9ATE50.0FBP24_PETHY; MADS-box protein FBP24
TrEMBLA0A314L9611e-142A0A314L961_NICAT; Protein transparent testa 16
STRINGXP_009785850.11e-141(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.21e-65MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]