PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00067g00163.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

NF-YB

Protein Properties

Length: 166aa MW: 18704 Da PI: 8.0581

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00067g00163.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	175.2	6.5e-55	29	124	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 +eqdr+lPianv+rimk++lP nakisk++ket+qecvsefisfvt+easdkcq+ekrkt+ngdd++wal++lGf++y+eplk y Peaxi162Scf00067g00163.1 29 KEQDRLLPIANVGRIMKQILPPNAKISKESKETMQECVSEFISFVTGEASDKCQKEKRKTVNGDDICWALGSLGFDNYAEPLKRY 113 89********************************************************************************* PP NF-YB 87 lkkyrelegek 97 l+kyrelegek Peaxi162Scf00067g00163.1 114 LHKYRELEGEK 124 *******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.0E-55	24	147	IPR009072	Histone-fold
SuperFamily	SSF47113	3.55E-42	31	155	IPR009072	Histone-fold
Pfam	PF00808	2.9E-27	34	98	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.5E-20	62	80	No hit	No description
PROSITE pattern	PS00685	0	65	81	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.5E-20	81	99	No hit	No description
PRINTS	PR00615	3.5E-20	100	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MVDNINILRA NEGHKYNSIS GSSSEGGIKE QDRLLPIANV GRIMKQILPP NAKISKESKE 60 TMQECVSEFI SFVTGEASDK CQKEKRKTVN GDDICWALGS LGFDNYAEPL KRYLHKYREL 120 EGEKANQNKA AGNNSIEERE RDEPQRKSTV SPTHNANNFF LPGRFI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-46	28	119	1	92	Transcription factor HapC (Eurofung)
4g92_B	2e-46	28	119	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019264713.1	9e-89	PREDICTED: nuclear transcription factor Y subunit B-4-like
Swissprot	O82248	4e-59	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A314L547	2e-87	A0A314L547_NICAT; Nuclear transcription factor y subunit b-5
STRING	XP_009775948.1	1e-85	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	1e-60	nuclear factor Y, subunit B5

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]