PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00068g00018.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRF
Protein Properties Length: 388aa    MW: 42589.1 Da    PI: 9.2448
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00068g00018.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.92.4e-25149192144
                       WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                               d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e
  Peaxi162Scf00068g00018.1 149 DPEPGRCRRTDGKKWRCSRDVVSGHKYCERHVHRGRNRSRKPVE 192
                               79***************************************987 PP
2QLQ51.14e-1877112136
                       QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                               s+F+ aQ+q+L+ Q+l+y++++a++PvPpeLl  ++
  Peaxi162Scf00068g00018.1  77 SYFSLAQWQELELQALIYRHMIAGAPVPPELLHLVK 112
                               79*****************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.5E-977113IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.86678113IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.6E-1378111IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.911149193IPR014977WRC domain
PfamPF088793.1E-21150192IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDFNMKQWRN QHESEDQEPT HSAKLPKLVL DLDSAVSGFS TSDTSALPLF ASEPTKYSVS  60
SDSTTTTTVT KFPKMGSYFS LAQWQELELQ ALIYRHMIAG APVPPELLHL VKKSLINSSP  120
YYFPQSLQQY NHYQQALLQS GYWGRTSMDP EPGRCRRTDG KKWRCSRDVV SGHKYCERHV  180
HRGRNRSRKP VEIPTTATPP GGNTTASSRG SGVLEVNNAM ASHARAPPHF TLSGTSPNSI  240
DLLHLNQRPS DSTFEKKVPL EAQNDISGDG KSSGQVLRHF FDDWPRQHQE STNARSNASS  300
MASATSLSIS MPGNPSSDFS LKLSTGDRHN SGSQHSNVDR STWGTNQAAS MGGPLAEALR  360
SSATNSSPTS VLHQLPRGST LEASYVNT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754487e-63HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755217e-63HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019245144.10.0PREDICTED: growth-regulating factor 3-like isoform X1
TrEMBLA0A1J6JAH10.0A0A1J6JAH1_NICAT; Growth-regulating factor 3
STRINGXP_009783589.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32832138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.12e-69growth-regulating factor 4