PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00069g00202.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

TCP

Protein Properties

Length: 418aa MW: 45694 Da PI: 6.767

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00069g00202.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.3	4e-36	36	167	2	113
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasecea 75 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++akpai+el+++ + + Peaxi162Scf00069g00202.1 36 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKPAIDELAELpawkptigtnlE--------N 112 79**************************************************************555544432110........2 PP TCP 76 esssssasnsssg.................kaaksaakskksqksaasalnlake 113 e+ +++++ +s + +++ + ++ +s+ ++as+l ++ e Peaxi162Scf00069g00202.1 113 EHTQKQQEDNSFNvhqenatslfdnvdgpsSKRVMTSHGANSSGNTASFLPPSLE 167 2222222211111333334566666666543333333444444444444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.1E-33	36	154	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	34.543	38	96	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MGDAQYQNQQ TTSRLGLRNT VGEIVEVEGG HIVRSTGRKD RHSKVCTAKG PRDRRVRLSA 60 HTAIQFYDVQ DRLGYDRPSK AVDWLIKKAK PAIDELAELP AWKPTIGTNL ENEHTQKQQE 120 DNSFNVHQEN ATSLFDNVDG PSSKRVMTSH GANSSGNTAS FLPPSLESDA IADTIKSFFP 180 MGSSAAANSS AAMQFQGFQD PNFLSRTNSQ SQDLRLSLQF QDPILLHEQN QQAQHHNNPN 240 NRREQGQVQV QAPALFTGFD SSGWSMHQQP VELGRVQRVG SWSDNRDNAP GGSGAVTGSG 300 GYLFNSPQAP PQPLLQQLFG GHNQFFSQRG PLQSSNTPSV RAWMDPTSAI SIASADPSHH 360 QHHQAVFPMY PSSIPGYGFA SDVGGFSGFR VPARIQGEEE EHDGISDKPS SASSDSRH

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MGDAQYQNQQ TTSRLGLRNT VGEIVEVEGG HIVRSTGRKD RHSKVCTAKG PRDRRVRLSA  60
HTAIQFYDVQ DRLGYDRPSK AVDWLIKKAK PAIDELAELP AWKPTIGTNL ENEHTQKQQE  120
DNSFNVHQEN ATSLFDNVDG PSSKRVMTSH GANSSGNTAS FLPPSLESDA IADTIKSFFP  180
MGSSAAANSS AAMQFQGFQD PNFLSRTNSQ SQDLRLSLQF QDPILLHEQN QQAQHHNNPN  240
NRREQGQVQV QAPALFTGFD SSGWSMHQQP VELGRVQRVG SWSDNRDNAP GGSGAVTGSG  300
GYLFNSPQAP PQPLLQQLFG GHNQFFSQRG PLQSSNTPSV RAWMDPTSAI SIASADPSHH  360
QHHQAVFPMY PSSIPGYGFA SDVGGFSGFR VPARIQGEEE EHDGISDKPS SASSDSRH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	4e-20	43	96	1	54	Putative transcription factor PCF6
5zkt_B	4e-20	43	96	1	54	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:18816164, ECO:0000269\|PubMed:25378179}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00009	PBM	Transfer from 929286	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:18816164}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC297683	0.0	KC297683.1 Petunia hybrid cultivar W115 TCP trancription factor (TCP5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016581164.1	0.0	PREDICTED: transcription factor TCP4-like
Swissprot	Q8LPR5	1e-103	TCP4_ARATH; Transcription factor TCP4
TrEMBL	M4PM76	0.0	M4PM76_9SOLA; TCP trancription factor
STRING	PGSC0003DMT400032269	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3207	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.3	8e-92	TCP family protein

Publications ? help Back to Top
Schommer C, et al. Control of jasmonate biosynthesis and senescence by miR319 targets. PLoS Biol., 2008. 6(9): p. e230 [PMID:18816164] Ju Y, et al. Arabidopsis JINGUBANG Is a Negative Regulator of Pollen Germination That Prevents Pollination in Moist Environments. Plant Cell, 2016. 28(9): p. 2131-2146 [PMID:27468890] Challa KR,Aggarwal P,Nath U Activation of YUCCA5 by the Transcription Factor TCP4 Integrates Developmental and Environmental Signals to Promote Hypocotyl Elongation in Arabidopsis. Plant Cell, 2016. 28(9): p. 2117-2130 [PMID:27597774] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Li J, et al. RABBIT EARS regulates the transcription of TCP4 during petal development in Arabidopsis. J. Exp. Bot., 2016. 67(22): p. 6473-6480 [PMID:27838638] Sun X, et al. Activation of secondary cell wall biosynthesis by miR319-targeted TCP4 transcription factor. Plant Biotechnol. J., 2017. 15(10): p. 1284-1294 [PMID:28233945] Kubota A, et al. TCP4-dependent induction of CONSTANS transcription requires GIGANTEA in photoperiodic flowering in Arabidopsis. PLoS Genet., 2017. 13(6): p. e1006856 [PMID:28628608] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Vadde BVL,Challa KR,Nath U The TCP4 transcription factor regulates trichome cell differentiation by directly activating GLABROUS INFLORESCENCE STEMS in Arabidopsis thaliana. Plant J., 2018. 93(2): p. 259-269 [PMID:29165850] Challa KR,Rath M,Nath U The CIN-TCP transcription factors promote commitment to differentiation in Arabidopsis leaf pavement cells via both auxin-dependent and independent pathways. PLoS Genet., 2019. 15(2): p. e1007988 [PMID:30742619]