PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00071g10117.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 253aa    MW: 28990.5 Da    PI: 4.2223
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00071g10117.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.74.7e-211457144
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                              ++ien  nr vtfskRr g++KKA+E++++C++e+a+++f+++ 
  Peaxi162Scf00071g10117.1 14 EKIENWWNRRVTFSKRRDGLFKKASEICIMCGIEIAIVVFAPNS 57
                              579*************************************9974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-24666IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.53657IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-25780IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-14828IPR002100Transcription factor, MADS-box
PfamPF003194.6E-201563IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-142843IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-144364IPR002100Transcription factor, MADS-box
Gene3DG3DSA:1.10.601.104.2E-583232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MPRVSKGRKK VDIEKIENWW NRRVTFSKRR DGLFKKASEI CIMCGIEIAI VVFAPNSMKV  60
YSFGHPSVYE MVDRYFARHP PGDDEHEEGE EDDADADADD DDDDEDDDDD DDDDDDAVYD  120
NDDGDDDNGN GVNPELVEAY RSVSITRIAN ELMEKEDELA REIKRGKELE KVRKESGSDP  180
QKWWEAPIEK LNYDQLQEVK DAMKTAHEKV EKEAQRLKME KENIKFPYSN FGSALAPRHN  240
FDANEPSGSG STS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2501622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-25AGAMOUS-like 62