PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00074g00005.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 398aa    MW: 44112.7 Da    PI: 7.2297
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00074g00005.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.25.7e-3277181199
                               EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                               f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v 
  Peaxi162Scf00074g00005.1  77 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVS 161
                               89***************************966778999*********************************************** PP

                               EEE-.SS.SEE..EEEEE-S CS
                        B3  82 Fkld.gr.sefelvvkvfrk 99 
                               F++  g+  + +l++ ++r+
  Peaxi162Scf00074g00005.1 162 FQRGvGEsAKDRLFIDWRRR 181
                               **655777888899999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.2E-4367187IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.36E-3074181IPR015300DNA-binding pseudobarrel domain
CDDcd100171.40E-2775164No hitNo description
PROSITE profilePS5086314.66377182IPR003340B3 DNA binding domain
PfamPF023622.1E-2977181IPR003340B3 DNA binding domain
SMARTSM010193.2E-2377182IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MNFSYDQGCS HLSSSSSSSS SSSSSQKISV PFSYQQQQQR SWLNSSSSTN NGAEELVMMD  60
TPASTSANSM VEKEHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDSSTN EKGLLLNFED  120
RNGKPWRFRY SYWNSSQSYV MTKGWSRFVK DKKLDAGDIV SFQRGVGESA KDRLFIDWRR  180
RPDAPTHDHH RIQYPAAPWN HSLFLQSYPP HTYSAYGNHV GTRPNYYHTS TSNYYVNDNA  240
TTHHVVNGNP YPSGSLVYLR SGAAAQAPQV VQMQRGMSSG TFAEPMVFDS VPVVQGKAAA  300
KRLRLFGVNM DCPIPDSDQV CAMLSSSRSL PSPTPSTAAT FSHAPQFLSS SSSTSSSIPE  360
FRTFINYHAN PAAAEEEEEE EGLSDKGKAA SMSLDLDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A8e-69701821114B3 domain-containing transcription factor NGA1
5os9_B8e-69701821114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6686471e-131KF668647.1 Nicotiana benthamiana NGATHAa mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343756.11e-142PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_015162593.11e-142PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotO827991e-79NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLM1AWD51e-146M1AWD5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000318631e-147(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.17e-80B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]