PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00076g00071.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NAC
Protein Properties Length: 386aa    MW: 44120.6 Da    PI: 5.1802
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00076g00071.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM184.32.8e-57221491129
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               lppGfrFhPtdee++++yL++kv +k++++  +++evd++k+ePwdLp+k+k +ekewyfF++rd+ky+tg r+nrat+sgyWka
  Peaxi162Scf00076g00071.1  22 LPPGFRFHPTDEEIITCYLQEKVMDKRFTA-IAVAEVDLNKSEPWDLPAKAKMGEKEWYFFCQRDRKYPTGMRTNRATESGYWKA 105
                               79*************************999.88***************99999******************************** PP

                       NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                               tgkdke+++ k+ lvg+kktLvfykgrapkgekt+Wvmheyrle
  Peaxi162Scf00076g00071.1 106 TGKDKEIYKGKDCLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 149
                               *********99999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-6318173IPR003441NAC domain
PROSITE profilePS5100559.35122173IPR003441NAC domain
PfamPF023659.5E-3023148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGTPVLPMQV INQESDHDVL NLPPGFRFHP TDEEIITCYL QEKVMDKRFT AIAVAEVDLN  60
KSEPWDLPAK AKMGEKEWYF FCQRDRKYPT GMRTNRATES GYWKATGKDK EIYKGKDCLV  120
GMKKTLVFYK GRAPKGEKTN WVMHEYRLEG KLSYNCFHKA SMEEWVICRV FNKSMGVRRS  180
PLLLDSFVED LLDSPSSLPS LMEMPLSSSC LDDKPCTSSY RDELNNASSD EIHSSAYFST  240
GGFFNNNYYK QDQRLLMPKQ EEAEKSYGLF VPTHHIFTGI DTYQHNNHLA SSSSYDQTLF  300
LPNSKFSEFR TIPNYSLTCD GTTLERQQLS SNNSMISLSQ DTGLSTDVAN EISSVIPRFD  360
DSSKQFEDID PCSTIAAPDL DSIWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-53131737165NO APICAL MERISTEM PROTEIN
1ut4_B5e-53131737165NO APICAL MERISTEM PROTEIN
1ut7_A5e-53131737165NO APICAL MERISTEM PROTEIN
1ut7_B5e-53131737165NO APICAL MERISTEM PROTEIN
3swm_A5e-531317310168NAC domain-containing protein 19
3swm_B5e-531317310168NAC domain-containing protein 19
3swm_C5e-531317310168NAC domain-containing protein 19
3swm_D5e-531317310168NAC domain-containing protein 19
3swp_A5e-531317310168NAC domain-containing protein 19
3swp_B5e-531317310168NAC domain-containing protein 19
3swp_C5e-531317310168NAC domain-containing protein 19
3swp_D5e-531317310168NAC domain-containing protein 19
3ulx_A5e-53111743169Stress-induced transcription factor NAC1
4dul_A5e-53131737165NAC domain-containing protein 19
4dul_B5e-53131737165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5102140.0AF510214.1 Petunia x hybrida nam-like protein 17 (NH17) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009587307.11e-167PREDICTED: NAC domain-containing protein 79-like isoform X1
RefseqXP_016471991.11e-167PREDICTED: NAC domain-containing protein 79-like
SwissprotQ9FK445e-95NAC87_ARATH; NAC domain-containing protein 87
TrEMBLQ8LKN70.0Q8LKN7_PETHY; Nam-like protein 17 (Fragment)
STRINGXP_009587307.11e-166(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.24e-97Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]