PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00076g01010.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 326aa    MW: 38288.9 Da    PI: 4.7393
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00076g01010.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.59.4e-151150342
                              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                              i+++ +r++tf kR++g+ KK + LS+LCd+++++i++ +
  Peaxi162Scf00076g01010.1 11 IQDHKKRKTTFLKRKAGLCKKVSQLSILCDIKACMILYQE 50
                              8999********************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.862151IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-17186IPR002100Transcription factor, MADS-box
SMARTSM004324.6E-12164IPR002100Transcription factor, MADS-box
CDDcd002661.62E-18288No hitNo description
PRINTSPR004048.9E-8323IPR002100Transcription factor, MADS-box
PfamPF003197.0E-151151IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGKSRIKLEL IQDHKKRKTT FLKRKAGLCK KVSQLSILCD IKACMILYQE NIHGVDDQQE  60
IWPNDPKEVE ELINCYKKQP LEDRSKRTEN LSNFFENQKK KVKSEVAKLK KERTKHPTWD  120
SRFDTLSEVE LKDIARVLEE KIENTKRKFE FLKSNNNNND QEVWDYPELM NQTPCPTSYG  180
NNNIPFIDNK WFQEFMTSEF QEIPSSNVND NGMLFQEFMT SEFQEFPSSV VNSMDNGNLF  240
QEYMTSDQFQ VIPSSGVNYM DNGQHTVADY QFGINAENWL MNNDFGAGEF YFGSSSMMQQ  300
PMELLQLEYP NFTYNDSTTQ MPYNGF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009598741.14e-81PREDICTED: agamous-like MADS-box protein AGL82
TrEMBLA0A1S4B5Z13e-77A0A1S4B5Z1_TOBAC; agamous-like MADS-box protein AGL82
STRINGXP_009598741.12e-80(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63421232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-17M-type_MADS family protein