PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00078g00735.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family LBD
Protein Properties Length: 158aa    MW: 18072.5 Da    PI: 8.1239
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00078g00735.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.62.3e-39121111100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               +CaaCk lrrkC++dC++ pyfp ++p++f +vh+++Ga+nv k+l++++e++r d+++sl+yeA +r++dPvyG+vg+i+ l+q
  Peaxi162Scf00078g00735.1  12 RCAACKQLRRKCPSDCIFLPYFPPNNPQRFSYVHRIYGANNVGKMLQQVEEHQRADVADSLYYEAYCRIKDPVYGSVGIITVLNQ 96 
                               6************************************************************************************ PP

                    DUF260  86 qleqlkaelallkee 100
                               ++++l+ +la+++++
  Peaxi162Scf00078g00735.1  97 EIDHLQCQLAKVQAH 111
                               ***********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.72611112IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-3812109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
KKDLQTKMTS TRCAACKQLR RKCPSDCIFL PYFPPNNPQR FSYVHRIYGA NNVGKMLQQV  60
EEHQRADVAD SLYYEAYCRI KDPVYGSVGI ITVLNQEIDH LQCQLAKVQA HIDLLKAQTP  120
VQGELRQHVD FSASLLADQN GIYTSSLSSF DPSTHWFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-3661165113LOB family transfactor Ramosa2.1
5ly0_B6e-3661165113LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754406e-49HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019238658.17e-89PREDICTED: LOB domain-containing protein 24-like
SwissprotP594681e-43LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A1J6KI982e-87A0A1J6KI98_NICAT; Lob domain-containing protein 24
STRINGXP_009589427.15e-85(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52772039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.15e-46LOB domain-containing protein 24