PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00079g00092.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HD-ZIP
Protein Properties Length: 716aa    MW: 78382 Da    PI: 6.1821
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00079g00092.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.64.9e-1959114156
                               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               +++ +++t+ q++e+e++F+++++p+ ++r+eL k+lgL+  qVk+WFqN+R+++k
  Peaxi162Scf00079g00092.1  59 KKRYHRHTQLQITEMEAFFKECPHPDDKQRKELGKRLGLEPLQVKFWFQNKRTQMK 114
                               688999***********************************************998 PP
2START218.81.8e-682484691206
                               HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT CS
                     START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdet 75 
                               ela +a++el+++a+ +ep+W +s+     +++ +de++++f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW+  
  Peaxi162Scf00079g00092.1 248 ELAVAAMEELIRLAQTGEPLWITSPdnpteTILSEDEYVRTFPRGIGpkplgLKSEASRESAVVIMNHINLVEILMDVN-QWTSV 331
                               57899********************9999999************999********************************.***** PP

                               -S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESS CS
                     START  76 la....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellp 149
                               +a    +a tlev+s+g      galq+m+ae+q++splvp R+ +fvRy++ + +g+w++vdvS+d+ ++ +    v R++++p
  Peaxi162Scf00079g00092.1 332 FAglvsRALTLEVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKHHADGTWAVVDVSLDNLRPTS----VSRCRRRP 412
                               **********************************************************************975....8******* PP

                               EEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                     START 150 Sgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                               Sg+li++++ng+skvtw+ehv++++r +h+++r+lv+sg+a+gak+wvatl+rqce+
  Peaxi162Scf00079g00092.1 413 SGCLIQELPNGYSKVTWIEHVEVDDRAVHNIYRPLVNSGIAFGAKRWVATLDRQCER 469
                               *******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-2240114IPR009057Homeodomain-like
SuperFamilySSF466892.26E-1842116IPR009057Homeodomain-like
PROSITE profilePS5007116.11556116IPR001356Homeobox domain
SMARTSM003894.1E-1757120IPR001356Homeobox domain
PfamPF000461.2E-1659114IPR001356Homeobox domain
CDDcd000864.12E-1759117No hitNo description
SuperFamilySSF559613.85E-37239471No hitNo description
PROSITE profilePS5084846.558239472IPR002913START domain
CDDcd088751.30E-128243468No hitNo description
SMARTSM002348.0E-70248469IPR002913START domain
PfamPF018521.5E-57249469IPR002913START domain
Gene3DG3DSA:3.30.530.205.4E-6346469IPR023393START-like domain
SuperFamilySSF559611.12E-16489708No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MFQSNMFESH HHLLDMSHKS PENELDLIRD DEFETKSGTD IMENPSGDDQ DPNQRPNKKK  60
RYHRHTQLQI TEMEAFFKEC PHPDDKQRKE LGKRLGLEPL QVKFWFQNKR TQMKAQHERS  120
ENSQLRADNE KLRAENIRYK EALGNATCPN CGGPAAIGEM SFDEQHLRIE NARLREEIDR  180
ISGIAAKYVG KPMLTYPNLP SVRPTRSLDL GVGSFGPQTG LVGEMYSASD LLRSVSGPTD  240
ADKPMIIELA VAAMEELIRL AQTGEPLWIT SPDNPTETIL SEDEYVRTFP RGIGPKPLGL  300
KSEASRESAV VIMNHINLVE ILMDVNQWTS VFAGLVSRAL TLEVLSTGVA GNYNGALQVM  360
TAEFQVPSPL VPTRENYFVR YCKHHADGTW AVVDVSLDNL RPTSVSRCRR RPSGCLIQEL  420
PNGYSKVTWI EHVEVDDRAV HNIYRPLVNS GIAFGAKRWV ATLDRQCERL ASAMANNIPT  480
GDVGVITSPE GRKSMLKLAE RMVMSFCAGV GASTAHTWTT LSGSGADDVR VMTRKSIDDP  540
GRPPGIVLSA ATSFWLPVPP KRWDILSNGG LVQEMAHIAN GRDPGNCVSL LRVNSGNSSQ  600
SNMLILQESS TDSTGSYVIY APVDIVAMNV VLSGGDPDYV ALLPSGFAIL PDGSTSHGGG  660
NIPEVGIGGS LLTVAFQILV DSVPTAKLSL GSVATVNSLI KCTVERIKTA VACDNA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019249652.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A1J6IZ030.0A0A1J6IZ03_NICAT; Homeobox-leucine zipper protein meristem l1
STRINGXP_009597904.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]