PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00080g00064.1

Common Name

EOBII

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

MYB_related

Protein Properties

Length: 176aa MW: 19990.2 Da PI: 5.2719

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00080g00064.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.9	1e-17	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W++ a+ g++Rt+k+c++rw++yl Peaxi162Scf00080g00064.1 15 KGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYL 62 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-24	7	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.069	10	66	IPR017930	Myb domain
SMART	SM00717	8.1E-13	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-16	15	62	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	9.19E-22	16	89	IPR009057	Homeodomain-like
CDD	cd00167	5.18E-11	17	62	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.5E-8	66	96	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MDKKPCNSQD AEVRKGPWTM EEDLILINYI ANHGEGVWNS LAKSAGLKRT GKSCRLRWLN 60 YLRPDVRRGN ITPEEQLLIM ELHAKWGNRT RIQKHIKQAE TMNGQAASSE QNDHQEACTS 120 QMSNGPNDNT IDQTYSPTSY SGNVDTFQAG PNFLTEANDN MWSMEDIWSM QLLNGD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	8e-14	10	89	22	100	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU360893	1e-147	EU360893.1 Petunia x hybrida Myb-like transcription factor EOBII mRNA, complete cds.
GenBank	EU374207	1e-147	EU374207.1 Petunia x hybrida MYB-like protein NON1 mRNA, complete cds.
GenBank	JF793919	1e-147	JF793919.1 Petunia axillaris MYB transcription factor EOBII (EOBII) mRNA, complete cds.
GenBank	JF793920	1e-147	JF793920.1 Petunia exserta MYB transcription factor EOBII (EOBII) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009618404.1	1e-102	PREDICTED: myb-related protein 305-like
Swissprot	P81391	2e-83	MYB05_ANTMA; Myb-related protein 305
TrEMBL	E0CJS3	1e-124	E0CJS3_PETHY; MYB-like protein NON1
TrEMBL	F5CSS2	1e-124	F5CSS2_PETAX; MYB transcription factor EOBII
TrEMBL	F5CSS3	1e-124	F5CSS3_9SOLA; MYB transcription factor EOBII
STRING	XP_009618404.1	1e-101	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27810.1	2e-65	myb domain protein 21

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903] Klahre U, et al. Pollinator choice in Petunia depends on two major genetic Loci for floral scent production. Curr. Biol., 2011. 21(9): p. 730-9 [PMID:21497087]