PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00081g01411.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

LBD

Protein Properties

Length: 190aa MW: 20652.4 Da PI: 5.271

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00081g01411.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.9	4.3e-30	2	104	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C++C+vlrr+C+++C+l+ ++ p +q +++ +v k+FG+s ++++++a+pe++r+++++sl++eA+ r+ +Pv Gavg++ Peaxi162Scf00081g01411.1 2 SCNGCRVLRRRCSDNCTLRGCLdgiddPRAQGNATLFVSKFFGRSDLMSFISAVPENRRPALFKSLLFEACGRTVNPVTGAVGLL 86 6***********************99***************************************************** PP DUF260 81 lklqqqleqlkaelallk 98 ++++++++q+++e++l++ Peaxi162Scf00081g01411.1 87 STGNWHVCQKAVETVLAG 104 **********998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.239	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.8E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MSCNGCRVLR RRCSDNCTLR GCLDGIDDPR AQGNATLFVS KFFGRSDLMS FISAVPENRR 60 PALFKSLLFE ACGRTVNPVT GAVGLLSTGN WHVCQKAVET VLAGGNLRPV FSGILTPPYT 120 NSDDVSEFFR GAWNKSESFI DASSPNFMDA SNPWIGSEWS LCSETELSEV SLGLDSGNGL 180 KEPKLLNLFV

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	3e-48	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019224836.1	1e-97	PREDICTED: LOB domain-containing protein 38-like isoform X1
Swissprot	Q9SN23	2e-54	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A314KWD1	3e-96	A0A314KWD1_NICAT; Lob domain-containing protein 38
STRING	XP_009783238.1	2e-95	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	7e-57	LOB domain-containing protein 38