PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00084g00135.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family SRS
Protein Properties Length: 361aa    MW: 38840.7 Da    PI: 7.0129
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00084g00135.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702226.35.7e-701272833155
                    DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrelkskk 82 
                                g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+th+kstWvpaakrrerqqql+a+++++++++     ++++ + kr+ +  +
  Peaxi162Scf00084g00135.1 127 GGGISCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHLKSTWVPAAKRRERQQQLTALQQQQEEQQqtlqlHRDNMNPKRQREDPS 211
                               5789****************************************************99998887777888555555555555678 PP

                    DUF702  83 qsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGleek 155
                               +s+l +t++  ++ ++ le+ ++P++vss+avf+cvr+ssvdd+++++aYqtav+igGhvfkGiLydqG+e++
  Peaxi162Scf00084g00135.1 212 ASSLVCTRIIPSS-TSGLEVGNFPAKVSSNAVFHCVRMSSVDDADDQFAYQTAVNIGGHVFKGILYDQGPENQ 283
                               8889999987765.5589999*************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.5E-67129281IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016236.2E-27131173IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016245.9E-27233280IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MAGFFSLGGG SSSSQQDQAQ QQHQESSNNP PAPTEISPES WFLYRNDHQE LPTPFRGFEL  60
WQTSTNSQQP QIRGAINPLQ DLYPTSAVGL GVGPSRSSID FNISAAAAAR PDHHHHDQNL  120
VMMRSGGGGI SCQDCGNQAK KDCQHMRCRT CCKSRGFQCQ THLKSTWVPA AKRRERQQQL  180
TALQQQQEEQ QQTLQLHRDN MNPKRQREDP SASSLVCTRI IPSSTSGLEV GNFPAKVSSN  240
AVFHCVRMSS VDDADDQFAY QTAVNIGGHV FKGILYDQGP ENQYNMAAGE SSSGGGSASH  300
QHNLIGAAAG TATSAATTSA SGGAAAAAPP EAPPHYLDPS LYPAPLNTFM AGTQFFPPSR  360
S
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC3319113e-62KC331911.1 Solanum lycopersicum expression of terpenoids 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628752.11e-162PREDICTED: protein SHI RELATED SEQUENCE 1-like isoform X1
SwissprotK4B6C91e-124EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBLA0A0V0IDY81e-164A0A0V0IDY8_SOLCH; Uncharacterized protein
STRINGXP_009628752.11e-161(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.12e-76Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]