PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00087g00149.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

HD-ZIP

Protein Properties

Length: 238aa MW: 27582.4 Da PI: 4.624

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00087g00149.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.6	1.2e-19	31	85	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +f++eq++ Le++Fe++ ++ +++ ++Ak+lgL+ rqV +WFqN+Ra++k Peaxi162Scf00087g00149.1 31 KNKNRFSDEQIKSLETMFESETKLEPRKKLQIAKELGLEPRQVAIWFQNKRARYK 85 56789*************************************************9 PP
2	HD-ZIP_I/II	117.1	9.9e-38	32	123	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 +k r+s+eq+k+LE++Fe+e+kLep++K ++a+eLgl+prqva+WFqn+RAR+k+kqlEkdy+ L ++y++l+++ e+L+ke+++ Peaxi162Scf00087g00149.1 32 NKNRFSDEQIKSLETMFESETKLEPRKKLQIAKELGLEPRQVAIWFQNKRARYKSKQLEKDYNILVSNYNNLSSQYESLNKEKQS 116 799******************************************************************************** PP HD-ZIP_I/II 87 Lreelke 93 L ++k+ Peaxi162Scf00087g00149.1 117 LVMQVKQ 123 99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.7E-19	9	88	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.7E-19	13	89	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.831	27	87	IPR001356	Homeobox domain
SMART	SM00389	3.1E-16	29	91	IPR001356	Homeobox domain
Pfam	PF00046	4.7E-17	31	85	IPR001356	Homeobox domain
CDD	cd00086	7.66E-14	31	88	No hit	No description
PRINTS	PR00031	2.4E-5	58	67	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	62	85	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.4E-5	67	83	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.3E-13	87	129	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MFGGGEYFSS SAECFSASSF SSSSSRKRKI KNKNRFSDEQ IKSLETMFES ETKLEPRKKL 60 QIAKELGLEP RQVAIWFQNK RARYKSKQLE KDYNILVSNY NNLSSQYESL NKEKQSLVMQ 120 VKQLNDLLQK SQKNEQCCKQ EFGEIDIDSR SDNRDNKNQI NEKPSLSFDL SDHGIGVISD 180 DDSSIKADYF GVDEDHDFLN MVEPTDAILT SPENWASIDN DSLLDQPNTE YNWWDFWS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269\|PubMed:15604708, ECO:0000269\|PubMed:8771791}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018805268.1	7e-93	PREDICTED: homeobox-leucine zipper protein ATHB-12-like
Swissprot	P46897	2e-65	ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBL	A0A2R6RCH7	1e-95	A0A2R6RCH7_ACTCH; Homeobox-leucine zipper protein like
STRING	POPTR_0014s09860.1	1e-88	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2041	23	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	5e-65	homeobox 7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou SF, et al. Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis. New Phytol., 2015. 208(1): p. 188-97 [PMID:25919792]