PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00089g00129.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MIKC_MADS
Protein Properties Length: 141aa    MW: 16275.7 Da    PI: 10.4216
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00089g00129.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF916e-29959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krien+s rqvtfskRr+g+lKKA+ELS+LCdaeva++ifs++gk+y ++s
  Peaxi162Scf00089g00129.1  9 KRIENQSSRQVTFSKRRTGLLKKAFELSILCDAEVALLIFSPSGKFYQFAS 59
                              79***********************************************86 PP
2K-box52.52.1e-1880141869
                     K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                               ++  + +e +++e++ +++ i++L+   +h+ GedL+sL +keL+qLe+qL  ++++iR+kK
  Peaxi162Scf00089g00129.1  80 DQGPRAMEVWRTEIDGMRRTIDELEARDKHFAGEDLSSLGMKELNQLERQLRIGVERIRAKK 141
                               455667899*****************9**********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.212161IPR002100Transcription factor, MADS-box
CDDcd002653.09E-40278No hitNo description
SuperFamilySSF554558.63E-32284IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-30323IPR002100Transcription factor, MADS-box
PfamPF003197.3E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-303859IPR002100Transcription factor, MADS-box
PfamPF014864.5E-1585141IPR002487Transcription factor, K-box
PROSITE profilePS5129710.07686141IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MGRGKVELKR IENQSSRQVT FSKRRTGLLK KAFELSILCD AEVALLIFSP SGKFYQFASN  60
DIDRTILRYK NEVGLSKTND QGPRAMEVWR TEIDGMRRTI DELEARDKHF AGEDLSSLGM  120
KELNQLERQL RIGVERIRAK K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-25186188MEF2C
5f28_B1e-25186188MEF2C
5f28_C1e-25186188MEF2C
5f28_D1e-25186188MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in seed development. {ECO:0000269|PubMed:29853599}.
UniProtProbable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019267507.13e-86PREDICTED: truncated transcription factor CAULIFLOWER A-like
RefseqXP_019267508.13e-86PREDICTED: truncated transcription factor CAULIFLOWER A-like
RefseqXP_019267510.13e-86PREDICTED: truncated transcription factor CAULIFLOWER A-like
SwissprotA0A217EJJ01e-42AG11S_VITVI; Agamous-like MADS-box protein AGL11
SwissprotF6I4571e-42AG11C_VITVI; Agamous-like MADS-box protein AGL11
TrEMBLA0A314KYG37e-85A0A314KYG3_NICAT; Agamous-like mads-box protein agl19
STRINGSolyc03g019710.2.17e-85(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.22e-43MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Mejía N, et al.
    Molecular, genetic and transcriptional evidence for a role of VvAGL11 in stenospermocarpic seedlessness in grapevine.
    BMC Plant Biol., 2011. 11: p. 57
    [PMID:21447172]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  5. Malabarba J, et al.
    The MADS-box gene Agamous-like 11 is essential for seed morphogenesis in grapevine.
    J. Exp. Bot., 2017. 68(7): p. 1493-1506
    [PMID:28369525]
  6. Royo C, et al.
    The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11.
    Plant Physiol., 2018. 177(3): p. 1234-1253
    [PMID:29853599]