PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00094g00045.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

C2H2

Protein Properties

Length: 182aa MW: 20481.2 Da PI: 6.3559

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00094g00045.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.2e-05	30	52	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ Fs+ L H++ H Peaxi162Scf00094g00045.1 30 YRCSFCKRGFSNAQALGGHMNIH 52 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.68E-6	28	56	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.8E-4	28	54	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.468	30	57	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0053	30	52	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	32	52	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MEIDPSISSK SNQIITWRSE ELGLGHVRFY RCSFCKRGFS NAQALGGHMN IHRKDRARLK 60 EFSSDNLLSL DINNSSNPPP PILALAPTNE DSSQREVSYD VTISSPSKRL CVTSEESDRS 120 TTKVNHDYKH EMIIQDISQL PLFKETPLIK EVGQVVATKD MQLNPVSELD LELRLGLEPS 180 KV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016454746.1	8e-81	PREDICTED: probable transcriptional regulator RABBIT EARS
TrEMBL	A0A1S3YRA1	2e-79	A0A1S3YRA1_TOBAC; probable transcriptional regulator RABBIT EARS
STRING	XP_009596834.1	3e-75	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7463	16	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	2e-15	C2H2 family protein