PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00096g00154.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

M-type_MADS

Protein Properties

Length: 183aa MW: 20986 Da PI: 6.5335

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00096g00154.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	57.8	1.4e-18	3	52	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 i++k r+v+fskR++ ++KKAe LS L+ ae av++fs++gk y y+s Peaxi162Scf00096g00154.1 3 LIKSKEARYVSFSKRKASLFKKAEDLSNLTKAELAVLLFSPSGKTYSYCS 52 69**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	18.292	1	54	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.6E-14	1	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.06E-19	1	71	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-18	4	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.5E-8	16	31	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.5E-8	31	52	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MKLIKSKEAR YVSFSKRKAS LFKKAEDLSN LTKAELAVLL FSPSGKTYSY CSTSIEEITN 60 KFLQWKQDES NDDESDNNNV DKLLNVYKDL CDEIKIINEQ EKSRRWRYKI IHPDSEIPPD 120 KNMLDRLVEC KSQLDILKKM AIRLQELMPS TSESVPLTSA KPHLNIDLNV LPGLDEGECS 180 GTK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1780	12	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	3e-14	AGAMOUS-like 29