PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00099g00076.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

NAC

Protein Properties

Length: 310aa MW: 35353.7 Da PI: 8.1233

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00099g00076.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107	2.3e-33	59	199	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 lp+G++F+P+d+e++ e+L++kv +++ + + +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk Peaxi162Scf00099g00076.1 59 LPAGVKFDPSDNEIL-EHLEAKVLSDThklhplI---HqfilTIDGQdGICYTHPQKLP-GVSKDGQVRHFFHRPSKAYTTGTRK 138 799*********9.99*99995554442...133334666646******.566677888************ PP NAM 75 nratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +r+++ + +W++tgk+++++ +g l+g kk+Lv+y gr++k+ekt+Wvmh+y+l Peaxi162Scf00099g00076.1 139 RRKVHteidggETRWHKTGKTRPLFI-GGVLKGYKKILVLYtnYGRQKKPEKTNWVMHQYHL 199 744446655778**********.**********6658*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-37	53	218	IPR003441	NAC domain
PROSITE profile	PS51005	32.686	59	218	IPR003441	NAC domain
Pfam	PF02365	2.0E-14	60	199	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MTWYSQSTDE IGLPTAISEE EYNVTTSKVD EDITIITCPS CGHTIELQNQ RGIQDLPGLP 60 AGVKFDPSDN EILEHLEAKV LSDTHKLHPL IHQFILTIDG QDGICYTHPQ KLPGVSKDGQ 120 VRHFFHRPSK AYTTGTRKRR KVHTEIDGGE TRWHKTGKTR PLFIGGVLKG YKKILVLYTN 180 YGRQKKPEKT NWVMHQYHLG ENEEEKDGEL VISKVFYQTQ PRQGGSLNER KPLDNKSRSL 240 TKQDNPILKT TNFADYYNPS PFISYHIGIE NRDSSPQLIQ NLVVHGDSSP FVLPSNASKE 300 KYESREQKQN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019230486.1	0.0	PREDICTED: NAC domain-containing protein 73-like isoform X2
Swissprot	O49459	1e-111	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A1U7Y2Q7	0.0	A0A1U7Y2Q7_NICSY; NAC domain-containing protein 8-like
STRING	XP_009797428.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2875	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-113	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]