PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00100g00104.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 233aa    MW: 26725.3 Da    PI: 8.6479
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00100g00104.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.73.6e-191859142
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                              k+i+n+  r+vtfskRr g++KKA+EL++L +ae+a+i+ s 
  Peaxi162Scf00100g00104.1 18 KPIDNENSRHVTFSKRRLGLFKKASELCILSGAEIAIIVQSL 59
                              68*************************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.5771058IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-231070IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.67E-2311100IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-121232IPR002100Transcription factor, MADS-box
PfamPF003196.4E-192067IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-123247IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-124768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MNVNTVKKTQ GRRKIAIKPI DNENSRHVTF SKRRLGLFKK ASELCILSGA EIAIIVQSLK  60
RRRLFAFGHP SVDAVIDHYV NGKSSSTRAD QSNNVQQNNQ YYSKICRELE EDKKKRKEEE  120
VIEETKILND GGFWWDKPTD DMGIVELEGF MTALEELKKN VTMRVDELSM INGSSVHASS  180
SNSTRFGVED QFLNQAMDYY ASIVPFDFDH QLLGPRDQAF EVQVLAKARY KFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15963KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231377.11e-103agamous-like MADS-box protein AGL62
TrEMBLA0A3Q7ERW31e-102A0A3Q7ERW3_SOLLC; Uncharacterized protein
STRINGSolyc01g106700.2.11e-103(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-29AGAMOUS-like 62