PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00102g01641.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family WRKY
Protein Properties Length: 170aa    MW: 19392.9 Da    PI: 9.383
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00102g01641.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1016.9e-32106164159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYGqK vk++++prsYYrCt+++C+vkk+++r ++d+++v++tYeg Hnh+
  Peaxi162Scf00102g01641.1 106 LDDGYKWRKYGQKAVKNNRHPRSYYRCTYHTCNVKKQIQRLSKDTTIVVTTYEGIHNHP 164
                               59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-3293164IPR003657WRKY domain
SuperFamilySSF1182907.72E-2899165IPR003657WRKY domain
PROSITE profilePS5081128.529101166IPR003657WRKY domain
SMARTSM007748.4E-36106165IPR003657WRKY domain
PfamPF031066.9E-25107164IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MNTKDTFAPS TFFMSSLPST LSMQPPSLLN QMPIQNSSTL GLDINDWVNG LLSSPIIDNH  60
DHPTTVGDQQ NSSSCLIRNK GNKVIGKEKY VPPRISFQTR SSEDILDDGY KWRKYGQKAV  120
KNNRHPRSYY RCTYHTCNVK KQIQRLSKDT TIVVTTYEGI HNHPCDKLME
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2496163774Probable WRKY transcription factor 4
2lex_A1e-2496163774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754472e-33HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755202e-33HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019160501.16e-57PREDICTED: probable WRKY transcription factor 43
SwissprotQ8VWQ41e-46WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLA0A1U8F8W76e-55A0A1U8F8W7_CAPAN; probable WRKY transcription factor 75
STRINGXP_009598201.17e-54(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63742433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.16e-49WRKY DNA-binding protein 56