PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00104g00101.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 222aa    MW: 25234.7 Da    PI: 4.8506
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00104g00101.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.41.8e-08671001649
                               HHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                    SRF-TF  16 RrngilKKAeELSvLCdaevaviifsstgklyey 49 
                               Rr ++ K A+EL + Cd+++ +i+fs+++k + +
  Peaxi162Scf00104g00101.1  67 RRSTLYKAASELAIQCDIDIGIILFSPKDKPFSF 100
                               9**************************9986655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003199.8E-1167100IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.73667104IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-1267115IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MACPLKVDDR DSELGRKDED LLEDLIATVV LNQVECAIDQ VEGFIVGESS LPKEEAQQLQ  60
PIPGFYRRST LYKAASELAI QCDIDIGIIL FSPKDKPFSF IHPTVESVID RFLDPHAQLS  120
ESTRLVAAHA RNKVNELNRK TKELDKIEEA TNKQAHAYEK MEKVCQKGWW ESIEHLNEDE  180
IMKFEAWLKA TTFNMDRRLK QLKNEASTLA PLGDAHNAPS PF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019250901.14e-58PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A1J6IHL96e-57A0A1J6IHL9_NICAT; Agamous-like mads-box protein agl61 (Fragment)
STRINGXP_009781581.17e-57(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-18AGAMOUS-like 61