PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00104g00132.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

M-type_MADS

Protein Properties

Length: 172aa MW: 19820.4 Da PI: 5.7195

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00104g00132.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	35	1.8e-11	3	46	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +i+n+ r+++fskRr ++ K A+EL +++++ +i+fs+++k Peaxi162Scf00104g00132.1 3 KIQNEVDRYISFSKRRSTLYKTASELVSQTNIDIGIILFSPKDK 46 599**************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.3E-5	1	53	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.395	1	54	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.19E-15	2	65	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.8E-15	3	50	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MVKIQNEVDR YISFSKRRST LYKTASELVS QTNIDIGIIL FSPKDKPFAF FHPTAEAVID 60 RFLDPHAPLS ESTRLVASHA RNKVNELKMN TKELDKIEEA TNKQALAYEK MKEVAHKGWW 120 ESIEQFDEDE IIKFEAWLNA TAFNMDRRLK QLENKASTSV PLEDSDNAPS PF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009781581.1	2e-67	PREDICTED: agamous-like MADS-box protein AGL61
Refseq	XP_016474013.1	3e-67	PREDICTED: agamous-like MADS-box protein AGL61
TrEMBL	A0A1S4ABV1	6e-66	A0A1S4ABV1_TOBAC; agamous-like MADS-box protein AGL61
TrEMBL	A0A1U7WW96	4e-66	A0A1U7WW96_NICSY; agamous-like MADS-box protein AGL61
STRING	XP_009781581.1	6e-67	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA382	20	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	2e-23	AGAMOUS-like 61