PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00104g01011.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 343aa    MW: 39970.8 Da    PI: 9.1287
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00104g01011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF451.4e-141663249
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                              +i+n+  r+++f+kRr ++ K A+EL + Cd+++ +i+fs+++k + +
  Peaxi162Scf00104g01011.1 16 KIQNEVDRYTSFCKRRSTLYKTASELAIQCDVDIGIILFSPKDKPFSF 63
                              599**************************************9986655 PP
2SRF-TF43.54.2e-14174221249
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                    SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                               +i+n+  r+++f+kRr ++ K A+EL + Cd+++ +i++s+++k + +
  Peaxi162Scf00104g01011.1 174 KIQNEVDRYTSFCKRRSTLYKAASELAIQCDVDIGIILLSPKDKPFSF 221
                               599**************************************9986655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.0E-18766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.287767IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.18E-20878IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-11929IPR002100Transcription factor, MADS-box
PfamPF003196.6E-181663IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-112944IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-114465IPR002100Transcription factor, MADS-box
SMARTSM004326.1E-17165224IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.881165225IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.28E-20166236IPR002100Transcription factor, MADS-box
PfamPF003197.3E-17174221IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEDKKTKGRQ KIPMVKIQNE VDRYTSFCKR RSTLYKTASE LAIQCDVDIG IILFSPKDKP  60
FSFIHPTVES VIDRFLDPHA QLSESTRLVA AHARNKVNEL NRKTKELDKI EEATNKQVHA  120
YEKMEKVCQK GWWESIEHLN EDEIMRFEAW LKATTFNMDR HKKTKGRQKI PMVKIQNEVD  180
RYTSFCKRRS TLYKAASELA IQCDVDIGII LLSPKDKPFS FIHPTVESVI DRFLDPHAQL  240
SESTRLVAAH ARNKVNEHNR KTKELDKIEE ATKKQVHAYE NMEKVCQKGW WESIEHLNED  300
EIMKFEAWLK ATTFNMDRRL KQLKNEASTS APLGDAHNAP SPF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016474013.17e-69PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A1S4ABV12e-67A0A1S4ABV1_TOBAC; agamous-like MADS-box protein AGL61
STRINGXP_009595132.18e-66(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-27AGAMOUS-like 61