PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00109g00139.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

M-type_MADS

Protein Properties

Length: 190aa MW: 20870.7 Da PI: 6.6647

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00109g00139.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	83.9	9.9e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ie s rqvtfskRr+g++KKAeELS+LCda+v +i+fsstgkly ++s Peaxi162Scf00109g00139.1 9 KKIEKISSRQVTFSKRRTGLFKKAEELSILCDAQVGIIVFSSTGKLYKFAS 59 689999*******************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.0E-38	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	30.88	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	6.74E-40	2	78	No hit	No description
SuperFamily	SSF55455	1.24E-30	2	91	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-26	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.6E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-26	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MGRGKLEMKK IEKISSRQVT FSKRRTGLFK KAEELSILCD AQVGIIVFSS TGKLYKFASP 60 KSSMEKIVDR YNSVPDSSDH DTVENVAEPE LDALKTEVAK LQQEQILLEL LEKSSLQIEE 120 LGNSSVNHHP ESHPAARKKS GGSSTLVCDC KSDGQGDSDT CLRLGLTVAT SHEKKIPKIE 180 CTSNDCESPM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	4e-18	1	89	1	87	MEF2C
5f28_B	4e-18	1	89	1	87	MEF2C
5f28_C	4e-18	1	89	1	87	MEF2C
5f28_D	4e-18	1	89	1	87	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006351403.1	2e-87	PREDICTED: MADS-box transcription factor 23
Swissprot	Q6VAM4	5e-32	MAD23_ORYSJ; MADS-box transcription factor 23
TrEMBL	M1C6V0	4e-86	M1C6V0_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400060995	7e-87	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14210.1	1e-30	AGAMOUS-like 44

Publications ? help Back to Top
Puig J, et al. Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice. Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70 [PMID:23466806] Yu C, et al. The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice. PLoS ONE, 2014. 9(8): p. e105597 [PMID:25140876] Wang H, et al. A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway. Plant Physiol., 2016. 170(4): p. 2365-77 [PMID:26858364]