PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00122g02520.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

WOX

Protein Properties

Length: 226aa MW: 26044.2 Da PI: 5.051

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00122g02520.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.5	3.4e-21	75	135	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le++F + n +ps++++++++ +l +++e++V++WFqNrRa+ k+ Peaxi162Scf00122g02520.1 75 RQRWTPTPVQLQILERMFDQgNGTPSKQKIKDITFELsqhgQISETNVYNWFQNRRARSKR 135 89***************99************************************97 PP
2	Wus_type_Homeobox	101.2	7.3e-33	75	137	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G tP+k++i++it eL+++G+i+++NV++WFQNr+aR+++kq Peaxi162Scf00122g02520.1 75 RQRWTPTPVQLQILERMFDQGNGTPSKQKIKDITFELSQHGQISETNVYNWFQNRRARSKRKQ 137 79***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	5.3E-13	73	140	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.52E-18	74	139	IPR009057	Homeodomain-like
Pfam	PF00046	5.4E-19	75	135	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.2E-16	75	139	IPR009057	Homeodomain-like
CDD	cd00086	4.29E-12	75	137	No hit	No description
PROSITE profile	PS50071	14.301	75	136	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MEWDKQLQQE PPQRVEDMNG TGGGGMFVKI MTDEQMEVLR KQIAVYAVIC EKLVDLHKSM 60 ASQHDLAAGH RICGRQRWTP TPVQLQILER MFDQGNGTPS KQKIKDITFE LSQHGQISET 120 NVYNWFQNRR ARSKRKQQVT GNNVVESEVE TEVESPNEKK TKPEDLQYSD ILTSKAEEGS 180 SRPAENFDQL SFYAMSNPRM DQLIEKMEDA ASYHPYLHEE NFDMTG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	136	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019253116.1	1e-129	PREDICTED: WUSCHEL-related homeobox 13-like isoform X1
Swissprot	Q5QMM3	2e-68	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A1J6IHE1	1e-127	A0A1J6IHE1_NICAT; Wuschel-related homeobox 13
STRING	XP_009801335.1	1e-121	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5675	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-64	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]