PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00123g00101.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 310aa    MW: 35797.6 Da    PI: 4.4406
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00123g00101.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.91.4e-111382141799
                               E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                        B3  17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                               ++p +fa+++ + + ++   + le ++g+ Wev++    + ++++l+kGW++F +   +  g f++F ++g s+f  +v++f+ 
  Peaxi162Scf00123g00101.1 138 SIPVDFASRYcE-NIQN--PVYLEVPDGEIWEVEV--VHSESQIWLAKGWQDFSDYYSISCGHFLMFGYNGCSRF--NVTIFDV 214
                               79********63.4234..5***************..888888*************************9886666..9999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010194.8E-4131215IPR003340B3 DNA binding domain
SuperFamilySSF1019361.43E-16135215IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.6E-16137215IPR015300DNA-binding pseudobarrel domain
PfamPF023624.5E-8138213IPR003340B3 DNA binding domain
CDDcd100171.04E-11138213No hitNo description
PROSITE profilePS5086311.068139215IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MKGGLEIVVN SPCVKEEHWT AYLEPYFQKE VAELARINHE NCAKVLSYCR ENILFTRMWC  60
LSMHLTRHYM STSIMVKDVE ERFIYAMEKT IMYITKDLDE ALVYFLPFCV VVLVRYLYVS  120
GALDMQGIGT TVVDYIHSIP VDFASRYCEN IQNPVYLEVP DGEIWEVEVV HSESQIWLAK  180
GWQDFSDYYS ISCGHFLMFG YNGCSRFNVT IFDVSASEIE FPYNAAHDTR LAQESDQIEF  240
HDFIEISDGA RRRQEEEADD DVSIEINTKS IMVEEPQENE ASPSSARKTK SKKLVYSGLL  300
AVDTIDHLLI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754409e-31HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019230776.13e-53PREDICTED: uncharacterized protein LOC109211655 isoform X2
TrEMBLA0A1J6INP25e-51A0A1J6INP2_NICAT; B3 domain-containing transcription factor vrn1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.18e-19B3 family protein