PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00123g01013.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 402aa    MW: 46319.4 Da    PI: 6.7028
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00123g01013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3391.4e-122761898
                              --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                        B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                              +p +fa+++ ++ +++  + le ++g++Wev++    + ++++l+kGW++F +   +  g f++F ++grs f  +v++f+
  Peaxi162Scf00123g01013.1  2 IPVEFARRYCKNMQNP--VYLEVPDGEVWEVEV--VHSENQIWLAKGWQDFSDYYSISFGHFLMFGYNGRSHF--NVTIFD 76
                              99*******5554454..***************..899999****************************9999..999998 PP
2B351.22.3e-16224304488
                               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                + ps+v+k   l +p k a+++ ++  + ++l+l+ +   sW+vk+ ++ ++ r  + +GWkeFv +n+Lk gD+++F++++ +
  Peaxi162Scf00123g01013.1 224 FMQPSYVFKPYSLFVPVKIARKYFLE--NCRDLVLRVPGRGSWSVKCAFETTKAR--IHSGWKEFVLDNKLKFGDVCIFEVIKGT 304
                               6789*******************887..4569***************88777766..99*********************88643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.281178IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-16278IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0047278IPR003340B3 DNA binding domain
CDDcd100173.12E-11276No hitNo description
SuperFamilySSF1019361.29E-16278IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-9276IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-21213313IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.92E-19214313IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.0E-13221315IPR003340B3 DNA binding domain
PROSITE profilePS5086313.155221315IPR003340B3 DNA binding domain
PfamPF023627.1E-14223304IPR003340B3 DNA binding domain
CDDcd100172.12E-17225313No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
GIPVEFARRY CKNMQNPVYL EVPDGEVWEV EVVHSENQIW LAKGWQDFSD YYSISFGHFL  60
MFGYNGRSHF NVTIFDVNAT EIEYPYNAAH GTHHAQERDQ IELDDSIKIS EDVLRNHRGK  120
EKISDMVEDS IENTGKCPLG QSRKRHREEE DSEDDDSVYM LTERMEVEKS EEDVASPSFT  180
SSREQKQQCE IVYDEKKTLM DKESSIAYQR AKKFKSENPV ILSFMQPSYV FKPYSLFVPV  240
KIARKYFLEN CRDLVLRVPG RGSWSVKCAF ETTKARIHSG WKEFVLDNKL KFGDVCIFEV  300
IKGTKLIDVT IFPAAGSTSM HKISDRKVPE VSDNSAPCSL SKIVHTKKLK QRRGGSYGLN  360
SKIKEEYGEG AEIEHPVEIL GHCPLGAAKE KDWKRRQRVV FN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-1419631224140B3 domain-containing transcription factor VRN1
4i1k_B5e-1419631224140B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016454453.11e-174PREDICTED: uncharacterized protein LOC107778682 isoform X1
RefseqXP_016454455.11e-174PREDICTED: uncharacterized protein LOC107778682 isoform X3
RefseqXP_016490750.11e-174PREDICTED: B3 domain-containing protein Os03g0619600-like isoform X3
TrEMBLA0A1S3YQP51e-173A0A1S3YQP5_TOBAC; uncharacterized protein LOC107778682 isoform X1
TrEMBLA0A1S3YR621e-173A0A1S3YR62_TOBAC; uncharacterized protein LOC107778682 isoform X3
TrEMBLA0A1S4BPF61e-173A0A1S4BPF6_TOBAC; B3 domain-containing protein Os03g0619600-like isoform X3
STRINGXP_009760928.11e-173(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-35B3 family protein