PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00123g01721.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

TCP

Protein Properties

Length: 208aa MW: 22356.5 Da PI: 8.8946

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00123g01721.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.4	1.3e-34	54	121	6	73
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 ++++++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+ a+pai+++tgt++ +a+ + Peaxi162Scf00123g01721.1 54 SSTKDRHTKVNGRGRRVRMPALCAARVFQLTKELGHRTDGETIEWLLRHAEPAIIAATGTGTVPATTV 121 689*********************************************************98888555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.1E-30	55	123	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.21	56	110	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MGSEMVLHHH QFSNTNQPHD NEVALMAGNM TTNDKKALMV VSKKRNNSSL SVSSSTKDRH 60 TKVNGRGRRV RMPALCAARV FQLTKELGHR TDGETIEWLL RHAEPAIIAA TGTGTVPATT 120 VLTTAEGIKS PPSVLAPVSR STAVSGFPMG GCGVFPMTGN PSCRLDLEFS NGYRHMPFTA 180 LLLQPVNSTA ADDGGEEKPL VIDFVPSY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019251615.1	8e-79	PREDICTED: transcription factor TCP11
Swissprot	Q9SJK7	2e-36	TCP11_ARATH; Transcription factor TCP11
TrEMBL	A0A1J6IUH0	2e-77	A0A1J6IUH0_NICAT; Transcription factor tcp11
STRING	XP_009794398.1	2e-76	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	4e-29	TCP family protein