PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00126g00911.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 609aa    MW: 67725.8 Da    PI: 4.236
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00126g00911.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.71.9e-151452745
                              HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                    SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                              snr   +s+R++g+lKKA+ELS+LCd+++ + +fs+ gk
  Peaxi162Scf00126g00911.1 14 SNRIGVYSRRKKGLLKKANELSILCDIDIFLAMFSPGGK 52
                              788889******************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.9E-17159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.156160IPR002100Transcription factor, MADS-box
CDDcd002662.38E-18283No hitNo description
SuperFamilySSF554551.44E-19393IPR002100Transcription factor, MADS-box
PfamPF003193.6E-141456IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-82237IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-83758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MGRAKLKLHK LDGSNRIGVY SRRKKGLLKK ANELSILCDI DIFLAMFSPG GKPSVYKSEN  60
SSFEDMISKF AEVNPEERAK RKMECLETIK KACKKSDHDV NIAEQLCPGI RLSDTEGRLR  120
LWKNLDKIDS IQQLRKMEDS ISKSLNEIAK HKYGVGSSTF GAGQDFQPSS VQHGIDISSN  180
FDARKELHPC SSFHGCDSEN METYEDLNSF DSSLVYDTGQ DFQASSLMQH GMNVGQELYQ  240
CSSVHGGNSE YMDACNAFNS FPQGYLEEPS FSFESYTNLV GNKEIEVSKP ESENFIPDEV  300
FLDCQLNQDY IGTEFCFTFD VPQLEQMDDK GNAFDCGISK DSGLPQSNFH DTPKSSSGTN  360
CDNMILADSI NFLYGMDSLS SDAGEELSSS SSINRGTNLP STQLDPCLSL HGADRENMDG  420
YEDLNVFDPS LKFDIEQEFQ SSSSIQYEMN SPVSFHDGQE PHRSSSVHGC DSESVNGYED  480
LNSFVQGFLE DPSLSFESST ELACNHDIEN FKPGCGNCSP DKMFLDCQLN QEDLQIAFRS  540
TFDLPLAEQM DVQESTFDSL NKGFGLPQLT SIILALPDDD FAGDLDSFIG MQAEVLMVPS  600
IHGYKQKES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009593754.10.0PREDICTED: uncharacterized protein LOC104090386
RefseqXP_009593755.10.0PREDICTED: uncharacterized protein LOC104090386
RefseqXP_009593756.10.0PREDICTED: uncharacterized protein LOC104090386
RefseqXP_009593757.10.0PREDICTED: uncharacterized protein LOC104090386
RefseqXP_016499254.10.0PREDICTED: uncharacterized protein LOC107817880
RefseqXP_016499255.10.0PREDICTED: uncharacterized protein LOC107817880
RefseqXP_016499257.10.0PREDICTED: uncharacterized protein LOC107817880
RefseqXP_016499258.10.0PREDICTED: uncharacterized protein LOC107817880
RefseqXP_016499259.10.0PREDICTED: uncharacterized protein LOC107817880
RefseqXP_018624362.10.0PREDICTED: uncharacterized protein LOC104090386
RefseqXP_018624363.10.0PREDICTED: uncharacterized protein LOC104090386
TrEMBLA0A1S4CDN80.0A0A1S4CDN8_TOBAC; uncharacterized protein LOC107817880
STRINGXP_009593754.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1394878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.22e-42AGAMOUS-like 30