PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00128g00124.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

NF-YC

Protein Properties

Length: 143aa MW: 15880.3 Da PI: 9.7356

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00128g00124.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	54.9	2e-17	16	104	10	97
NF-YC 10 iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflv 93 +e a + ++ ++P++r+kk++k ded++++ +ea l++++ elf+ l+ +s a e+kr+++k i av+r + + dfl+ Peaxi162Scf00128g00124.1 16 VEVAGEAHQLQIPISRVKKLMKLDEDINKVNSEALQLIANSTELFVEFLAEKSAKVALEKKRKSIKLEHIRVAVKRHQpMSDFLL 100 5677788899***************************************************************987367** PP NF-YC 94 divp 97 d p Peaxi162Scf00128g00124.1 101 DSLP 104 *987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	5.24E-19	23	107	IPR009072	Histone-fold
Pfam	PF00808	3.9E-19	26	89	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	6.4E-20	28	104	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MPGEDLPESS TAAAAVEVAG EAHQLQIPIS RVKKLMKLDE DINKVNSEAL QLIANSTELF 60 VEFLAEKSAK VALEKKRKSI KLEHIRVAVK RHQPMSDFLL DSLPLPSQPS DPSPKVQNRP 120 RLSTDKPVPS GTRRIEAFFQ KCT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009786327.1	3e-76	PREDICTED: nuclear transcription factor Y subunit C-1
Refseq	XP_016460645.1	3e-76	PREDICTED: nuclear transcription factor Y subunit C-1-like
TrEMBL	A0A0V0H358	5e-78	A0A0V0H358_SOLCH; Putative chromatin accessibility complex protein 1-like (Fragment)
STRING	PGSC0003DMT400074841	1e-78	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11435	24	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43250.1	9e-33	nuclear factor Y, subunit C13