PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00128g00824.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family Trihelix
Protein Properties Length: 387aa    MW: 44243.3 Da    PI: 6.4596
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00128g00824.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.32e-2375157286
                  trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                               W ++e+++Li  rre+++ ++++k++k+lW+++s kmre+gf rsp++C++kw+nl k++kk k +++   ++s+ +++y +++e
  Peaxi162Scf00128g00824.1  75 WVQEETRTLISQRRELDSLFNTSKSNKHLWDQISLKMREKGFDRSPTMCTDKWRNLLKEFKKAKCNQEL--NGSVVKMSYHKEIE 157
                               ***************************************************************999988..46677899988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-465137IPR009057Homeodomain-like
PROSITE profilePS500908.29367131IPR017877Myb-like domain
SMARTSM007171.6E-471133IPR001005SANT/Myb domain
CDDcd122032.84E-2773138No hitNo description
PfamPF138372.1E-1774158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MYMSEKPQNS INLLYNDQEN SNTNMIIQVS TPPPNTHHSQ QPHHPPHHLN SDTTSSGGED  60
NINSVKGPKK RAETWVQEET RTLISQRREL DSLFNTSKSN KHLWDQISLK MREKGFDRSP  120
TMCTDKWRNL LKEFKKAKCN QELNGSVVKM SYHKEIEELL RDRNKNGGGF KNSGLKVDAF  180
MQFSDKGLDD TDITFGPVEE NGRPTLNLER QLDHDGHPLA ITAADAVTAS GVSPWNWRET  240
PGNGEQSNST EGRVISVKWG DYTKRIGIDG SADAIKEAIK STFRLRTNRA FWLEDEDNIV  300
RTIDRDMPLR SYTLHVDEGL TIKVCMYEEA EHLPVHTEDK TFYTAADFRD FLSHRGWTCL  360
REYNGYRHVD IMDELCPGAV YRGVNLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A1e-3969155186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankS469420.0S46942.1 Box II Factor [tobacco, mRNA Partial, 1506 nt].
GenBankTOBB2F0.0M96432.1 Nicotiana tabacum DNA-binding protein (B2F) gene, 3' end.
GenBankTOBGT1A0.0M93436.2 Nicotiana tabacum DNA-binding protein (GT-1a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016434047.10.0PREDICTED: trihelix transcription factor GT-4-like
SwissprotQ9LU921e-159TGT4_ARATH; Trihelix transcription factor GT-4
TrEMBLQ433260.0Q43326_TOBAC; Box II Factor (Fragment)
STRINGXP_009784713.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51132136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25990.11e-162Trihelix family protein