PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00128g01411.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

M-type_MADS

Protein Properties

Length: 83aa MW: 9500.07 Da PI: 10.8894

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00128g01411.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	79.2	3e-25	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ks rq tfskRr g++KKA+ LS+LCd++va i+fss+g+l+ +ss Peaxi162Scf00128g01411.1 9 KRIEDKSSRQATFSKRRSGLMKKANHLSILCDVDVAAIVFSSRGRLFQFSS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	7.6E-36	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.632	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.64E-32	2	60	No hit	No description
SuperFamily	SSF55455	2.22E-27	2	64	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-26	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.1E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-26	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 83 aa Download sequence Send to blast
MGRKKVEIKR IEDKSSRQAT FSKRRSGLMK KANHLSILCD VDVAAIVFSS RGRLFQFSSP 60 NRINKAAFDE TDAYVMQLKN CIF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	4e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_Q	4e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_R	4e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_S	4e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_A	4e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_B	4e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_C	4e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_D	4e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_E	4e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_F	4e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.
UniProt	Probable transcription factor (Probable). Is required, together with TT16/AGL32 for the maternal control of endothelium formation, which is essential for female gametophyte development and fertilization, and seed formation (PubMed:22176531). {ECO:0000269\|PubMed:22176531, ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019237016.1	7e-32	PREDICTED: agamous-like MADS-box protein AGL27 isoform X1
Swissprot	Q2QW53	2e-23	MAD13_ORYSJ; MADS-box transcription factor 13
Swissprot	Q38836	1e-23	AGL11_ARATH; Agamous-like MADS-box protein AGL11
TrEMBL	A0A1J6K049	2e-31	A0A1J6K049_NICAT; Agamous-like mads-box protein agl15
STRING	Solyc05g015730.1.1	4e-31	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.2	3e-26	MIKC_MADS family protein

Publications ? help Back to Top
Gindullis F,Rose A,Patel S,Meier I Four signature motifs define the first class of structurally related large coiled-coil proteins in plants. BMC Genomics, 2002. 3: p. 9 [PMID:11972898] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yamaki S,Satoh H,Nagato Y Gypsy embryo specifies ovule curvature by regulating ovule/integument development in rice. Planta, 2005. 222(3): p. 408-17 [PMID:16001259] Dreni L, et al. The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice. Plant J., 2007. 52(4): p. 690-9 [PMID:17877710] Yamaki S,Nagato Y,Kurata N,Nonomura K Ovule is a lateral organ finally differentiated from the terminating floral meristem in rice. Dev. Biol., 2011. 351(1): p. 208-16 [PMID:21146515] Li H,Liang W,Yin C,Zhu L,Zhang D Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy. Plant Physiol., 2011. 156(1): p. 263-74 [PMID:21444646] Li H, et al. Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate. Plant Cell, 2011. 23(7): p. 2536-52 [PMID:21784949] Ezquer I, et al. The Developmental Regulator SEEDSTICK Controls Structural and Mechanical Properties of the Arabidopsis Seed Coat. Plant Cell, 2016. 28(10): p. 2478-2492 [PMID:27624758]