PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00129g00011.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

NAC

Protein Properties

Length: 325aa MW: 37100.1 Da PI: 8.0018

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00129g00011.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.9	2.7e-55	16	151	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.........kvkaeekewyfFskrdkkyatgkrkn 75 lppGfrFhPtdeel+++yL++kv ++++ + ++i evd++kvePwdLp k k+k +ekewyfF+ rdkky+tg+r+n Peaxi162Scf00129g00011.1 16 LPPGFRFHPTDEELITHYLAPKVLDSSFCA-KAIGEVDLNKVEPWDLPcKfyvkhllerKAKMGEKEWYFFCIRDKKYPTGQRTN 99 79***********************999.88***********658999999887777999*************** PP NAM 76 ratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 rat++gyWkatgkdke+++ +++lvg+kktLvfykgrap+gek++Wvmheyrl Peaxi162Scf00129g00011.1 100 RATEAGYWKATGKDKEIFK-SKTLVGMKKTLVFYKGRAPRGEKSNWVMHEYRL 151 ***************.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.1E-61	12	176	IPR003441	NAC domain
PROSITE profile	PS51005	57.388	16	176	IPR003441	NAC domain
Pfam	PF02365	9.7E-30	17	151	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MATTYGFVGH DEQMELPPGF RFHPTDEELI THYLAPKVLD SSFCAKAIGE VDLNKVEPWD 60 LPCKFYVKHL LERKAKMGEK EWYFFCIRDK KYPTGQRTNR ATEAGYWKAT GKDKEIFKSK 120 TLVGMKKTLV FYKGRAPRGE KSNWVMHEYR LDGKFSVHNL PKTAKNECVI CRIFKKNSGG 180 KKISISSLMR SNSFNNNPQS STLPPLMDMS PYNSNITTRY DGETSNNSHV TCFSDSVEDQ 240 KPQTNHLLSC SPATSVDFPK NPSNVPNNVM PFMETFQYGD SGIMQENSIT RLLLDNNDMS 300 LKGYEDHDLF INSAGPVDLD CLWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-51	13	182	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-51	13	182	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-51	13	182	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-51	13	182	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-51	13	182	17	174	NAC domain-containing protein 19
3swm_B	2e-51	13	182	17	174	NAC domain-containing protein 19
3swm_C	2e-51	13	182	17	174	NAC domain-containing protein 19
3swm_D	2e-51	13	182	17	174	NAC domain-containing protein 19
3swp_A	2e-51	13	182	17	174	NAC domain-containing protein 19
3swp_B	2e-51	13	182	17	174	NAC domain-containing protein 19
3swp_C	2e-51	13	182	17	174	NAC domain-containing protein 19
3swp_D	2e-51	13	182	17	174	NAC domain-containing protein 19
4dul_A	2e-51	13	182	14	171	NAC domain-containing protein 19
4dul_B	2e-51	13	182	14	171	NAC domain-containing protein 19
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT740994	1e-151	KT740994.1 Solanum lycopersicum NAC2-domain containing protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009768516.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLR3	1e-113	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	A0A1U7VUA0	0.0	A0A1U7VUA0_NICSY; NAC domain-containing protein 100-like
STRING	XP_009768516.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.1	1e-108	NAC domain containing protein 80

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]