PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00129g00103.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 293aa    MW: 33830.7 Da    PI: 8.5273
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00129g00103.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.56.4e-12445344
                              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                              i+ +  r+ tf kR++g+ KK +E  +LC+++ ++i++++++
  Peaxi162Scf00129g00103.1  4 ISKEKVRNATFKKRKEGLKKKLHEFTTLCNVNGCMIMYGPKQ 45
                              7888899********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.96E-12180IPR002100Transcription factor, MADS-box
SMARTSM004328.4E-4158IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.886144IPR002100Transcription factor, MADS-box
PfamPF003194.9E-13445IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MELISKEKVR NATFKKRKEG LKKKLHEFTT LCNVNGCMIM YGPKQSDGSN SDPEIWTTNS  60
TTTESLQEEE VQNLIDEYKK SSTVTRSGKT FGLSDYFIDR NKNVEKELIK LKRMNMEKKY  120
PCWVKDMDHL SEIKLRKFIS FLDEKIEKVK FRIDLFKGNM NIASEYFMKA AAEGKELSQL  180
TNYCDNVSHL MVQGGSEWGG FMNNHHEQAI YPYWQYNGAA SSSGSNDIRG ALMKYENETM  240
MCNNQMPYSP YVAPPIPQPA PCMMVPSAFP QTDLSRRENE HDVKGKLLPY LRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019255836.11e-123PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A1J6IR271e-121A0A1J6IR27_NICAT; Agamous-like mads-box protein agl80
STRINGXP_009774508.11e-119(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.15e-13AGAMOUS-like 82