PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00129g00230.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

NAC

Protein Properties

Length: 365aa MW: 41336.4 Da PI: 5.5201

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00129g00230.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.6	4.1e-52	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 + pGfrFhPtdeelv +yLk+k+++++l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wka Peaxi162Scf00129g00230.1 14 MLPGFRFHPTDEELVGFYLKRKIQQRSLSI-ELIKQVDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKA 97 579*************************.89***********9888999************************** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+d++++s+ ++ +glkk+Lvfy+gra +g ktdW+mhe+rl Peaxi162Scf00129g00230.1 98 TGTDRPIYSSdCTKCIGLKKSLVFYRGRAARGIKTDWMMHEFRL 141 *****967778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-57	12	173	IPR003441	NAC domain
PROSITE profile	PS51005	56.632	14	173	IPR003441	NAC domain
Pfam	PF02365	1.9E-25	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MDEKVDVEKL DEVMLPGFRF HPTDEELVGF YLKRKIQQRS LSIELIKQVD IYKYDPWDLP 60 KLASTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDCT KCIGLKKSLV 120 FYRGRAARGI KTDWMMHEFR LPTTSSDSAP PKKFLDKNFP PNDSWAICRI FKKTNSMANR 180 ALSYPWVTPL PDVASPPEVF NQSANSIHFS SDNNDLLQGG LTDNFSALNA LSYKALNTMV 240 SRPLFVASPS SDVSYNFMFS SPEVSGSMFF NTSPALIPDD IKASETIDFE GPQQQLNGFS 300 ISTSQEMQRS ISMEDDEAGL RSNQDSNNDN TTQWENIRSS IGFPFSLTTS LADAWKPSLP 360 WDSPS

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MDEKVDVEKL DEVMLPGFRF HPTDEELVGF YLKRKIQQRS LSIELIKQVD IYKYDPWDLP  60
KLASTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDCT KCIGLKKSLV  120
FYRGRAARGI KTDWMMHEFR LPTTSSDSAP PKKFLDKNFP PNDSWAICRI FKKTNSMANR  180
ALSYPWVTPL PDVASPPEVF NQSANSIHFS SDNNDLLQGG LTDNFSALNA LSYKALNTMV  240
SRPLFVASPS SDVSYNFMFS SPEVSGSMFF NTSPALIPDD IKASETIDFE GPQQQLNGFS  300
ISTSQEMQRS ISMEDDEAGL RSNQDSNNDN TTQWENIRSS IGFPFSLTTS LADAWKPSLP  360
WDSPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-52	16	176	19	168	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-52	16	176	19	168	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-52	16	176	19	168	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-52	16	176	19	168	NO APICAL MERISTEM PROTEIN
3swm_A	2e-52	16	176	22	171	NAC domain-containing protein 19
3swm_B	2e-52	16	176	22	171	NAC domain-containing protein 19
3swm_C	2e-52	16	176	22	171	NAC domain-containing protein 19
3swm_D	2e-52	16	176	22	171	NAC domain-containing protein 19
3swp_A	2e-52	16	176	22	171	NAC domain-containing protein 19
3swp_B	2e-52	16	176	22	171	NAC domain-containing protein 19
3swp_C	2e-52	16	176	22	171	NAC domain-containing protein 19
3swp_D	2e-52	16	176	22	171	NAC domain-containing protein 19
4dul_A	2e-52	16	176	19	168	NAC domain-containing protein 19
4dul_B	2e-52	16	176	19	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC122544	1e-92	AC122544.1 Genomic sequence for Lycopersicon esculentum, clone L136C6, complete sequence.
GenBank	AC226507	1e-92	AC226507.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0136C06, complete sequence.
GenBank	EU161283	1e-92	EU161283.1 Solanum lycopersicum clone BAC L136C6 transcription factor style2.1 gene, complete cds.
GenBank	HG975441	1e-92	HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBank	HG975514	1e-92	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009600694.1	0.0	PREDICTED: putative NAC domain-containing protein 94
Swissprot	Q9ZVH0	1e-104	FEZ_ARATH; Protein FEZ
TrEMBL	A0A1S4CAZ4	0.0	A0A1S4CAZ4_TOBAC; putative NAC domain-containing protein 94
STRING	XP_009600694.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2202	22	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-107	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]