PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00129g00736.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family E2F/DP
Protein Properties Length: 303aa    MW: 34083.6 Da    PI: 9.9208
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00129g00736.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP40.15.9e-1329593971
                   E2F_TDP 39 vknkrRRiYDilNVLealnliekkekneirwkg 71
                              v  +rRRiYD++N+Le+++++++k+kn +rw+g
  Peaxi162Scf00129g00736.1 29 V--ERRRIYDVVNILESVGVLSRKAKNLYRWNG 59
                              5..8***************************98 PP
2E2F_TDP75.45.6e-2494174171
                   E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                               rkeksL ll+q+f+kl+++s+ + ++++++ ++L+ +      +k+k RR+YDi+NV+ ++nliek     + k+++rw+g
  Peaxi162Scf00129g00736.1  94 RKEKSLMLLAQNFVKLFQCSDVDLISFDKAVSALLDDihdpsAMKTKTRRLYDITNVFASMNLIEKirspdNGKPAFRWIG 174
                               79********************************999*********************************99*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013721.2E-5159IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467856.53E-92360IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.2E-122661IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.9E-102959IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.1E-2092175IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013729.0E-2694174IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.3E-1895174IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467856.26E-1296175IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSSSIEAQLK NPSSSSSSIY SQFFVVIGVE RRRIYDVVNI LESVGVLSRK AKNLYRWNGL  60
SAIPQTLDLL KKEGLRDQST DSSTCHNVAN VYNRKEKSLM LLAQNFVKLF QCSDVDLISF  120
DKAVSALLDD IHDPSAMKTK TRRLYDITNV FASMNLIEKI RSPDNGKPAF RWIGWNGNPR  180
TGSPTAPKSD DLKRRTFGTD ITNKIPKRCR DDSSSDLMSN GRVKRLMVAK DDELKDKNQE  240
MPTEQLNGHG TVDFVYGPFG PASLPRSGVP GKENSKQSLN WEDLASAYRP QYQNKGTTKI  300
FFE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016465902.11e-160PREDICTED: E2F transcription factor-like E2FF isoform X1
TrEMBLA0A1S3ZNG81e-159A0A1S3ZNG8_TOBAC; E2F transcription factor-like E2FF isoform X1
STRINGXP_009771455.11e-160(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25222457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.11e-66DP-E2F-like 1