PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00129g01043.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HD-ZIP
Protein Properties Length: 284aa    MW: 31965 Da    PI: 4.5396
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00129g01043.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.29e-2164117356
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               k++++t+eq++ Le+ Fe ++++  +++ +LAkklgL+ rqV vWFqNrRa++k
  Peaxi162Scf00129g01043.1  64 KKRRLTPEQVHLLEKSFETENKLEPDRKSQLAKKLGLQPRQVAVWFQNRRARWK 117
                               5678*************************************************9 PP
2HD-ZIP_I/II136.49.3e-4463155193
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               ekkrrl+ eqv+lLE+sFe+e+kLep+rK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l ++ ++++k+++
  Peaxi162Scf00129g01043.1  63 EKKRRLTPEQVHLLEKSFETENKLEPDRKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDHLKSSYDSLLSDFDSITKDND 147
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLreelke 93 
                               +L++e+++
  Peaxi162Scf00129g01043.1 148 KLKAEVAS 155
                               ***99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.52E-2049121IPR009057Homeodomain-like
PROSITE profilePS5007118.23659119IPR001356Homeobox domain
SMARTSM003891.9E-2062123IPR001356Homeobox domain
PfamPF000466.9E-1864117IPR001356Homeobox domain
CDDcd000861.90E-2064120No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2265126IPR009057Homeodomain-like
PRINTSPR000313.1E-69099IPR000047Helix-turn-helix motif
PROSITE patternPS00027094117IPR017970Homeobox, conserved site
PRINTSPR000313.1E-699115IPR000047Helix-turn-helix motif
PfamPF021832.7E-17119161IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MESGRIFFDP SCNGNMLFLG NGDSIFRGAR SMMKMEDSSK RRPFFTSPED LYDEEYYDEQ  60
SPEKKRRLTP EQVHLLEKSF ETENKLEPDR KSQLAKKLGL QPRQVAVWFQ NRRARWKTKQ  120
LERDYDHLKS SYDSLLSDFD SITKDNDKLK AEVASLLEKL QEKVVGSGAG TSEKSEGLEV  180
DAAMTLQVKA EDRLSSGSGG SAVVDEHSPQ LVDSGDSYVH SGHEEYAGVG GYNIPPPVDG  240
LNSEEDDGSD DGSCHGYFSN VFVAAEEHHH HEEEEGEPLG WFWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111119RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8087580.0KJ808758.1 Nicotiana tabacum homeodomain leucine zipper protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338548.11e-168PREDICTED: homeobox-leucine zipper protein HAT5
SwissprotQ022834e-94HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLM0ZIA11e-166M0ZIA1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000013221e-167(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA78912330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.14e-78homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]