PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00129g01529.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family LBD
Protein Properties Length: 315aa    MW: 34096 Da    PI: 6.3915
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00129g01529.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.69.1e-4311109199
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               +CaaCk+lrrkC+++C++apyfp e+p kfanvhklFGasnv kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+
  Peaxi162Scf00129g01529.1  11 PCAACKFLRRKCVPGCIFAPYFPPEEPTKFANVHKLFGASNVGKLLNEIQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQR 95 
                               7************************************************************************************ PP

                    DUF260  86 qleqlkaelallke 99 
                               ql +l++el+++++
  Peaxi162Scf00129g01529.1  96 QLIHLQKELDATNA 109
                               *********99876 PP
2DUF260798.1e-2517425024100
                    DUF260  24 aeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                               +e+p kfanvh++FGasnv kll++l++++re a++sl+yeAear+rdPvyG+vg+i+ lq +l + ++el+++++e
  Peaxi162Scf00129g01529.1 174 SEDPIKFANVHRVFGASNVGKLLSDLQPHQREVAANSLAYEAEARMRDPVYGCVGTISLLQAKLINFQKELDATNAE 250
                               467899*****************************************************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.10610111IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-4211108IPR004883Lateral organ boundaries, LOB
PROSITE profilePS5089115.293147251IPR004883Lateral organ boundaries, LOB
PfamPF031958.8E-24175248IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MASSSNISNP PCAACKFLRR KCVPGCIFAP YFPPEEPTKF ANVHKLFGAS NVGKLLNEIQ  60
PHQREDAVNS LAYEAEARMK DPVYGCVGAI SVLQRQLIHL QKELDATNAD LLRYANRDQV  120
NSSGGVVINN NIIQMGNQQR SFNSSGGIAS AIDQTYGFCV PSYSSHQLIN NNVSEDPIKF  180
ANVHRVFGAS NVGKLLSDLQ PHQREVAANS LAYEAEARMR DPVYGCVGTI SLLQAKLINF  240
QKELDATNAE LMKYANREVG SSGGVVINNN QMGNQQRSFN SSGGIASASA SASDQTSHQL  300
NDDVSGNNNP EVNDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-6322602120LOB family transfactor Ramosa2.1
5ly0_B9e-6322602120LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNot known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009597524.13e-89PREDICTED: LOB domain-containing protein 25-like isoform X1
RefseqXP_016505823.13e-89PREDICTED: LOB domain-containing protein 25-like
RefseqXP_018625398.13e-89PREDICTED: LOB domain-containing protein 25-like isoform X1
RefseqXP_018625399.13e-89PREDICTED: LOB domain-containing protein 25-like isoform X1
SwissprotQ9FML44e-65LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A1S4CXF47e-88A0A1S4CXF4_TOBAC; LOB domain-containing protein 25-like
STRINGXP_009597524.11e-88(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.41e-66LBD family protein
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]
  2. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]