PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00130g01110.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 291aa    MW: 33170.1 Da    PI: 7.476
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00130g01110.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.42.1e-12159184126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               y   +C+++ +tG+C yGd+CkF+H+
  Peaxi162Scf00130g01110.1 159 YQPDICKDYKETGYCGYGDSCKFMHD 184
                               67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-9156189IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878158186IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7158185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-12159189IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-10159184IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.107.6E-13217272IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.25E-12230273No hitNo description
PfamPF139201.2E-8230272No hitNo description
CDDcd001629.38E-8231272No hitNo description
PROSITE profilePS5008910.409231269IPR001841Zinc finger, RING-type
SMARTSM001846.1E-5231268IPR001841Zinc finger, RING-type
PROSITE patternPS005180246255IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MVEESENEDV EGESTVIYTK KKPSAAANHK LHFSTNGSSK SNTPTESSVD SKATRFHFES  60
SKKNQLQTDN RATSTLETET EFSKDARAIR ERALKLAEEA LKGKSKTEGD EKLYKGMNQY  120
IDYKAGLRRE HTISNEKAGG AHGPLRASAH IRVSTRFDYQ PDICKDYKET GYCGYGDSCK  180
FMHDRGDYKS GWQLEKEWDE AEKERKRKLA MGMLEEDDED AENDDALPFA CFICRQPFVD  240
PVVTKCKHYF CEHCALKQHA KNKRCFVCNQ PTLGIFNIAF EIRKRMAAQG K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M1e-6769286113317RING finger protein 113A
5z58_M1e-6769286113317RING finger protein 113A
6ff4_t1e-6769286113317RING finger protein 113A
6ff7_t1e-6769286113317RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233105.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-137C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A1J6KDY70.0A0A1J6KDY7_NICAT; Zinc finger ccch domain-containing protein 1
STRINGXP_009609000.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44032337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-135C3H family protein