PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00139g00049.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 343aa    MW: 38534.1 Da    PI: 5.8405
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00139g00049.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.1e-12126177155
                               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +r++h ++Er+RR+++N+ ++ +r+l+P++   + ++ + a+i   A++++k+L+
  Peaxi162Scf00139g00049.1 126 QRMTHIAVERNRRKQMNEYLAMIRSLMPPS---YVQRGDQASIIGGAINFVKELE 177
                               79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.42E-11124181No hitNo description
PROSITE profilePS5088814.608125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-17125203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-12126197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-8131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MALETVVYPQ ESFGYCCKEF YVSANLGNYD LGLLQGGEEM TFTSLLDDNN NNTTPYNRES  60
SSSPVMYNNA NKEYYSWDPI SSDHQLYMEG SPVMMESPAA RAANTSGRRK RRRTRSCKNK  120
EELENQRMTH IAVERNRRKQ MNEYLAMIRS LMPPSYVQRG DQASIIGGAI NFVKELEHHL  180
QTLEAQKKTH SQQHQQQEQQ SNNGSSTPLF AEYFTFPQYS THSNNCNSTS QATVATISCE  240
DSPMATEKAS ALADIEVTMA ESHANLKILS KKRPKQLLKI VAGLQCLWLT VLHLNVTTVD  300
QMVLYSLSVK LEEGCQLTTA DDIADAVNQL IDRIQEEAAA SSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108112RKRRR
2108113RKRRRT
3126137RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754432e-38HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781858.10.0PREDICTED: transcription factor bHLH94-like
RefseqXP_016479713.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9C7T42e-90BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1S4AT811e-180A0A1S4AT81_TOBAC; transcription factor bHLH94-like
TrEMBLA0A1U7WTD21e-180A0A1U7WTD2_NICSY; transcription factor bHLH94-like
STRINGXP_009781858.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-84bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]