PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00140g00812.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

bHLH

Protein Properties

Length: 387aa MW: 42124.9 Da PI: 8.2126

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00140g00812.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.8	5.2e-05	277	315	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Peaxi162Scf00140g00812.1 277 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 315 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.28	265	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.72E-5	275	319	No hit	No description
SuperFamily	SSF47459	7.85E-11	275	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.6E-9	279	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MEPANLHHHQ QQQYHQLQFQ DQLPLVISPS SSSSNSCYGV ATTSTHSTWT PCTILNSGGS 60 SLNGAINMTN SSDLLLRQQQ SGITQDFGFH WANSISSQLV KQENSLDSYP RFTQMLKSPS 120 SIEERELSEM NAKLLLGTLS SSSTGLQLYP GDDLFYSSNS STNRGRFSQI YPSINVSNLN 180 INQASLANSS SLDMNLQPLD LVNSTGYGGS FSQNYGLTNH FQHSSERPGD SSTSISSSFS 240 NGVPEAKRTS NMLELPKNAP KKSRVDSRAS CPPFKVRKEK LGDRIAALQQ LVAPFGKTDT 300 ASVLMEAIGY IKFLQNQVET LSVPYMKSSR NKTSRSMHGV AGEMNGNEEV KRDLRSRGLC 360 LVPLSCLTYV TEGGGGVWPP PNFAGGT

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MEPANLHHHQ QQQYHQLQFQ DQLPLVISPS SSSSNSCYGV ATTSTHSTWT PCTILNSGGS  60
SLNGAINMTN SSDLLLRQQQ SGITQDFGFH WANSISSQLV KQENSLDSYP RFTQMLKSPS  120
SIEERELSEM NAKLLLGTLS SSSTGLQLYP GDDLFYSSNS STNRGRFSQI YPSINVSNLN  180
INQASLANSS SLDMNLQPLD LVNSTGYGGS FSQNYGLTNH FQHSSERPGD SSTSISSSFS  240
NGVPEAKRTS NMLELPKNAP KKSRVDSRAS CPPFKVRKEK LGDRIAALQQ LVAPFGKTDT  300
ASVLMEAIGY IKFLQNQVET LSVPYMKSSR NKTSRSMHGV AGEMNGNEEV KRDLRSRGLC  360
LVPLSCLTYV TEGGGGVWPP PNFAGGT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009586806.1	0.0	PREDICTED: transcription factor bHLH110
Refseq	XP_016460036.1	0.0	PREDICTED: transcription factor bHLH110-like
Swissprot	Q9SFZ3	2e-65	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A1S3Z6M3	0.0	A0A1S3Z6M3_TOBAC; transcription factor bHLH110-like
STRING	XP_009586806.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7533	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	4e-63	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]