PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00141g00619.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 201aa    MW: 22312.6 Da    PI: 8.3074
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00141g00619.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS43.74.4e-142175128181
                      GRAS 128 LlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvl 181
                               Llq LasRp+g+p +RiTgvg++ ++ +   l+ +g+ La++ +++gvpfef+  
  Peaxi162Scf00141g00619.1  21 LLQDLASRPGGTPFVRITGVGPQPAHaQDGGLQLVGQSLAEVSKSCGVPFEFHGA 75 
                               9********************977778999***********************84 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509858.8681201IPR005202Transcription factor GRAS
PfamPF035141.5E-112175IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MRTGSTSLIF RLHRKSVDVF LLQDLASRPG GTPFVRITGV GPQPAHAQDG GLQLVGQSLA  60
EVSKSCGVPF EFHGATLSGC EFVPEDYDHS RTRIARQHLP RFHATRPRDD KQGISAEEHC  120
VARYVVDIIA CEGADKVKRE VRPSRTLEGI QPKLHVCRVK VRCFLDGKIE LQQHLLLGDD  180
ICWQLLSKIK VLPNDLDVAS S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773976.13e-37PREDICTED: scarecrow-like protein 13
RefseqXP_016483598.13e-37PREDICTED: scarecrow-like protein 13
TrEMBLA0A1S4B4906e-36A0A1S4B490_TOBAC; scarecrow-like protein 13
TrEMBLA0A1U7W9T56e-36A0A1U7W9T5_NICSY; scarecrow-like protein 13
STRINGXP_009773976.11e-36(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.12e-21scarecrow-like 5